adding geo jupyter notebook image

jupyter-geo/Dockerfile

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+FROM alpine:3.5
+LABEL maintainer "Zac Flamig <[email protected]>"
+
+RUN apk --no-cache add \
+        bash \
+	ca-certificates \
+	cmake \
+	freetype-dev \
+	g++ \
+	gcc \
+	gfortran \
+	git \
+	jpeg-dev \
+	lapack-dev \
+	libffi-dev \
+	libpng-dev \
+	libstdc++ \
+	linux-headers \
+	m4 \
+	make \
+	musl-dev \
+	openssl-dev \
+	python3 \
+	python3-dev \
+        tini \
+	wget \
+	zlib-dev \
+	&& ln -s /usr/include/locale.h /usr/include/xlocale.h \
+	&& pip3 install --upgrade pip \
+	&& python3 -m pip --no-cache-dir install \
+	numpy
+
+RUN apk add --no-cache --virtual .build-deps-edge \
+        --repository http://dl-cdn.alpinelinux.org/alpine/edge/testing \
+        proj \
+        proj-util \
+        proj-dev
+
+# HDF5 Installation
+RUN wget https://www.hdfgroup.org/package/bzip2/?wpdmdl=4300 \
+        && mv "index.html?wpdmdl=4300" hdf5-1.10.1.tar.bz2 \
+        && tar xf hdf5-1.10.1.tar.bz2 \
+        && cd hdf5-1.10.1 \
+        && ./configure --prefix=/usr --enable-cxx --with-zlib=/usr/include,/usr/lib/x86_64-linux-gnu \
+        && make -j4 \
+        && make install \
+        && cd .. \
+        && rm -rf hdf5-1.10.1 \
+        && rm -rf hdf5-1.10.1.tar.bz2 \
+	&& export HDF5_DIR=/usr
+
+RUN HDF5_LIBDIR=/usr/lib HDF5_INCDIR=/usr/include python3 -m pip --no-cache-dir install \
+	--no-binary=h5py h5py
+
+# NetCDF Installation
+RUN wget https://github.com/Unidata/netcdf-c/archive/v4.4.1.1.tar.gz \
+        && tar xf v4.4.1.1.tar.gz \
+        && cd netcdf-c-4.4.1.1 \
+        && ./configure --prefix=/usr \
+        && make -j4 \
+        && make install \
+        && cd .. \
+        && rm -rf netcdf-c-4.4.1.1 \
+        && rm -rf v4.4.1.1.tar.gz
+
+# GEOS Installation
+RUN wget http://download.osgeo.org/geos/geos-3.6.2.tar.bz2 \
+        && tar xf geos-3.6.2.tar.bz2 \
+        && cd geos-3.6.2 \
+        && ./configure --prefix=/usr \
+        && make -j4 \
+        && make install \
+        && cd .. \
+        && rm -rf geos-3.6.2 \
+        && rm -rf geos-3.6.2.tar.bz2
+
+# GDAL Installation
+RUN git clone https://github.com/OSGeo/gdal.git /gdalgit \
+        && cd /gdalgit/gdal \
+        && ./configure --prefix=/usr \
+        && make \
+        && make install \
+	&& cd / \
+	&& rm -rf gdalgit
+
+RUN HDF5_LIBDIR=/usr/lib HDF5_INCDIR=/usr/include PROJ_DIR=/usr python3 -m pip --no-cache-dir install \
+        boto3 \
+        Cython \
+        dask-kubernetes \
+        fiona \
+        gdal \
+        geopandas \
+        jupyterhub \
+        jupyterlab \
+        matplotlib \
+        netcdf4 \
+	notebook \
+        pandas \
+        pyproj \
+	requests \
+        https://github.com/matplotlib/basemap/archive/v1.1.0.tar.gz \
+        scipy \
+        scikit-learn \
+        shapely \
+	&& mkdir /notebooks
+
+# https://github.com/SciTools/cartopy/pull/1289
+RUN python3 -m pip --no-cache-dir install \
+        git+https://github.com/snowman2/cartopy.git@5e624fe
+
+# Install Tini
+RUN wget --quiet https://github.com/krallin/tini/releases/download/v0.10.0/tini && \
+    echo "1361527f39190a7338a0b434bd8c88ff7233ce7b9a4876f3315c22fce7eca1b0 *tini" | sha256sum -c - && \
+    mv tini /usr/local/bin/tini && \
+    chmod +x /usr/local/bin/tini
+
+# Configure environment
+ENV CONDA_DIR /opt/conda
+ENV PATH /usr/local/bin:$PATH
+ENV SHELL /bin/bash
+ENV NB_USER jovyan
+ENV NB_UID 1000
+ENV HOME /home/$NB_USER
+ENV LC_ALL en_US.UTF-8
+ENV LANG en_US.UTF-8
+ENV LANGUAGE en_US.UTF-8
+
+# Create jovyan user with UID=1000 and in the 'users' group
+RUN adduser -H -D -s /bin/bash -u $NB_UID $NB_USER && \
+    mkdir -p $HOME/work && \
+    chown -R $NB_USER $HOME
+
+EXPOSE 8888
+WORKDIR /home/$NB_USER/work
+
+# Configure container startup
+ENTRYPOINT ["/sbin/tini", "--"]
+CMD ["start-notebook.sh"]
+
+# Add local files as late as possible to avoid cache busting
+COPY start.sh /usr/local/bin/
+COPY start-notebook.sh /usr/local/bin/
+COPY start-singleuser.sh /usr/local/bin/
+RUN chmod +x /usr/local/bin/*.sh
+
+COPY resources/custom.js /home/$NB_USER/.jupyter/custom/
+COPY resources/jupyter_notebook_config.py /home/$NB_USER/.jupyter/tmp.py
+RUN cat /home/$NB_USER/.jupyter/tmp.py >> /home/$NB_USER/.jupyter/jupyter_notebook_config.py && rm /home/$NB_USER/.jupyter/tmp.py
+
+USER $NB_USER

jupyter-geo/resources/custom.js

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+define(['base/js/namespace'], function(Jupyter){
+    Jupyter._target = '_self';
+})

jupyter-geo/resources/jupyter_notebook_config.py

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+c.NotebookApp.tornado_settings = {
+    'headers': {
+        'Content-Security-Policy':
+        "frame-ancestors 'self'"
+    }
+}

jupyter-geo/resources/templates/page.html

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+<!DOCTYPE HTML>
+<html>
+
+<head>
+    <meta charset="utf-8">
+
+    <title>{% block title %}Jupyter Notebook{% endblock %}</title>
+    {% block favicon %}<link id="favicon" rel="shortcut icon" type="image/x-icon" href="{{static_url("base/images/favicon.ico") }}">{% endblock %}
+    <meta http-equiv="X-UA-Compatible" content="IE=edge" />
+    <link rel="stylesheet" href="{{static_url("components/jquery-ui/themes/smoothness/jquery-ui.min.css") }}" type="text/css" />
+    <link rel="stylesheet" href="{{static_url("components/jquery-typeahead/dist/jquery.typeahead.min.css") }}" type="text/css" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0">
+
+    {% block stylesheet %}
+    <link rel="stylesheet" href="{{ static_url("style/style.min.css") }}" type="text/css"/>
+    {% endblock %}
+    <link rel="stylesheet" href="{{ base_url }}custom/custom.css" type="text/css" />
+    <script src="{{static_url("components/es6-promise/promise.min.js")}}" type="text/javascript" charset="utf-8"></script>
+    <script src="{{static_url('components/preact/index.js')}}" type="text/javascript"></script>
+    <script src="{{static_url('components/proptypes/index.js')}}" type="text/javascript"></script>
+    <script src="{{static_url('components/preact-compat/index.js')}}" type="text/javascript"></script>
+    <script src="{{static_url('components/requirejs/require.js') }}" type="text/javascript" charset="utf-8"></script>
+    <script>
+      require.config({
+          {% if version_hash %}
+          urlArgs: "v={{version_hash}}",
+          {% endif %}
+          baseUrl: '{{static_url("", include_version=False)}}',
+          paths: {
+            'auth/js/main': 'auth/js/main.min',
+            custom : '{{ base_url }}custom',
+            nbextensions : '{{ base_url }}nbextensions',
+            kernelspecs : '{{ base_url }}kernelspecs',
+            underscore : 'components/underscore/underscore-min',
+            backbone : 'components/backbone/backbone-min',
+            jed: 'components/jed/jed',
+            jquery: 'components/jquery/jquery.min',
+            json: 'components/requirejs-plugins/src/json',
+            text: 'components/requirejs-text/text',
+            bootstrap: 'components/bootstrap/js/bootstrap.min',
+            bootstraptour: 'components/bootstrap-tour/build/js/bootstrap-tour.min',
+            'jquery-ui': 'components/jquery-ui/jquery-ui.min',
+            moment: 'components/moment/min/moment-with-locales',
+            codemirror: 'components/codemirror',
+            termjs: 'components/xterm.js/xterm',
+            typeahead: 'components/jquery-typeahead/dist/jquery.typeahead.min',
+          },
+          map: { // for backward compatibility
+              "*": {
+                  "jqueryui": "jquery-ui",
+              }
+          },
+          shim: {
+            typeahead: {
+              deps: ["jquery"],
+              exports: "typeahead"
+            },
+            underscore: {
+              exports: '_'
+            },
+            backbone: {
+              deps: ["underscore", "jquery"],
+              exports: "Backbone"
+            },
+            bootstrap: {
+              deps: ["jquery"],
+              exports: "bootstrap"
+            },
+            bootstraptour: {
+              deps: ["bootstrap"],
+              exports: "Tour"
+            },
+            "jquery-ui": {
+              deps: ["jquery"],
+              exports: "$"
+            }
+          },
+          waitSeconds: 30,
+      });
+
+      require.config({
+          map: {
+              '*':{
+                'contents': '{{ contents_js_source }}',
+              }
+          }
+      });
+
+      // error-catching custom.js shim.
+      define("custom", function (require, exports, module) {
+          try {
+              var custom = require('custom/custom');
+              console.debug('loaded custom.js');
+              return custom;
+          } catch (e) {
+              console.error("error loading custom.js", e);
+              return {};
+          }
+      })
+
+    document.nbjs_translations = {{ nbjs_translations|safe }};
+    document.documentElement.lang = navigator.language.toLowerCase();
+    </script>
+
+    {% block meta %}
+    {% endblock %}
+
+</head>
+
+<body class="{% block bodyclasses %}{% endblock %}"
+ {% block params %}
+  {% if logged_in and token %}
+    data-jupyter-api-token="{{token | urlencode}}"
+  {% endif %}
+ {% endblock params %}
+dir="ltr">
+
+<noscript>
+    <div id='noscript'>
+      {% trans %}Jupyter Notebook requires JavaScript.{% endtrans %}<br>
+      {% trans %}Please enable it to proceed. {% endtrans %}
+  </div>
+</noscript>
+
+<div id="header">
+  <div id="header-container" class="container">
+  <div id="ipython_notebook" class="nav navbar-brand"><a href="{{default_url}}
+    {%- if logged_in and token -%}?token={{token}}{%- endif -%}" title='{% trans %}dashboard{% endtrans %}'>
+      {% block logo %}<img src='{{static_url("base/images/logo.png") }}' alt='Jupyter Notebook'/>{% endblock %}
+  </a></div>
+
+  {% block headercontainer %}
+  {% endblock %}
+
+  </div>
+  <div class="header-bar"></div>
+
+  {% block header %}
+  {% endblock %}
+</div>
+
+<div id="site">
+{% block site %}
+{% endblock %}
+</div>
+
+{% block after_site %}
+{% endblock %}
+
+{% block script %}
+{% endblock %}
+
+<script type='text/javascript'>
+  function _remove_token_from_url() {
+    if (window.location.search.length <= 1) {
+      return;
+    }
+    var search_parameters = window.location.search.slice(1).split('&');
+    for (var i = 0; i < search_parameters.length; i++) {
+      if (search_parameters[i].split('=')[0] === 'token') {
+        // remote token from search parameters
+        search_parameters.splice(i, 1);
+        var new_search = '';
+        if (search_parameters.length) {
+          new_search = '?' + search_parameters.join('&');
+        }
+        var new_url = window.location.origin + 
+                      window.location.pathname + 
+                      new_search + 
+                      window.location.hash;
+        window.history.replaceState({}, "", new_url);
+        return;
+      }
+    }
+  }
+  _remove_token_from_url();
+</script>
+</body>
+
+</html>

jupyter-geo/start-notebook.sh

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+#!/bin/bash
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+set -e
+
+. /usr/local/bin/start.sh jupyter notebook --no-browser --port 8888 --ip=* --NotebookApp.token='' --NotebookApp.disable_check_xsrf=True $*

jupyter-geo/start-singleuser.sh

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+#!/bin/bash
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+set -e
+
+# set default ip to 0.0.0.0
+if [[ "$NOTEBOOK_ARGS $@" != *"--ip="* ]]; then
+  NOTEBOOK_ARGS="--ip=0.0.0.0 $NOTEBOOK_ARGS"
+fi
+
+# handle some deprecated environment variables
+# from DockerSpawner < 0.8.
+# These won't be passed from DockerSpawner 0.9,
+# so avoid specifying --arg=empty-string
+if [ ! -z "$NOTEBOOK_DIR" ]; then
+  NOTEBOOK_ARGS="--notebook-dir='$NOTEBOOK_DIR' $NOTEBOOK_ARGS"
+fi
+if [ ! -z "$JPY_PORT" ]; then
+  NOTEBOOK_ARGS="--port=$JPY_PORT $NOTEBOOK_ARGS"
+fi
+if [ ! -z "$JPY_USER" ]; then
+  NOTEBOOK_ARGS="--user=$JPY_USER $NOTEBOOK_ARGS"
+fi
+if [ ! -z "$JPY_COOKIE_NAME" ]; then
+  NOTEBOOK_ARGS="--cookie-name=$JPY_COOKIE_NAME $NOTEBOOK_ARGS"
+fi
+if [ ! -z "$JPY_BASE_URL" ]; then
+  NOTEBOOK_ARGS="--base-url=$JPY_BASE_URL $NOTEBOOK_ARGS"
+fi
+if [ ! -z "$JPY_HUB_PREFIX" ]; then
+  NOTEBOOK_ARGS="--hub-prefix=$JPY_HUB_PREFIX $NOTEBOOK_ARGS"
+fi
+if [ ! -z "$JPY_HUB_API_URL" ]; then
+  NOTEBOOK_ARGS="--hub-api-url=$JPY_HUB_API_URL $NOTEBOOK_ARGS"
+fi
+if [ ! -z "$JUPYTER_ENABLE_LAB" ]; then
+  NOTEBOOK_BIN="jupyter labhub"
+else
+  NOTEBOOK_BIN=jupyterhub-singleuser
+fi
+
+. /usr/local/bin/start.sh $NOTEBOOK_BIN $NOTEBOOK_ARGS $@