Add covid19 x-ray notebooks (#39)

uc-cdis · Dec 2, 2020 · 5fd91ec · 5fd91ec
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commit 5fd91ec
Showing 1 changed file with 10 additions and 0 deletions.
diff --git a/jupyter-covid19/Dockerfile b/jupyter-covid19/Dockerfile
@@ -41,6 +41,16 @@ RUN touch /home/jovyan/covid19-notebook/symptoms_and_fatality_covid19.ipynb
 ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/SSR/SSR_notebook.ipynb /home/jovyan/covid19-notebook/
 RUN touch /home/jovyan/covid19-notebook/SSR_notebook.ipynb
 
+ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/X-ray/DarkCovidNet_binary_classes.ipynb /home/jovyan/covid19-notebook/
+RUN touch /home/jovyan/covid19-notebook/DarkCovidNet_binary_classes.ipynb
+
+ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/X-ray/DarkCovidNet_three_classes.ipynb /home/jovyan/covid19-notebook/
+RUN touch /home/jovyan/covid19-notebook/DarkCovidNet_three_classes.ipynb
+
+# peregrine helper script required by the X-ray notebooks
+ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/X-ray/peregrine.py /home/jovyan/covid19-notebook/
+RUN touch /home/jovyan/covid19-notebook/peregrine.py
+
 RUN chown -R jovyan:users /home/jovyan/covid19-notebook
 
 # premade notebooks dependencies