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PRC SSR notebook (#37)
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@paulineribeyre
paulineribeyre authored Nov 16, 2020
1 parent 546858b commit c16601d
Showing 1 changed file with 15 additions and 10 deletions.
25 changes: 15 additions & 10 deletions jupyter-covid19/Dockerfile
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Expand Up @@ -7,20 +7,22 @@ RUN touch /home/jovyan/welcome.html

RUN chown -R jovyan:users /home/jovyan/welcome.html

# copy premade notebooks
# copy readme and notebooks requirements
RUN mkdir /home/jovyan/covid19-notebook
ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/jhu-summary-overview/COVID-19-JHU_data_analysis_04072020.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/COVID-19-JHU_data_analysis_04072020.ipynb

ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/kaggle-demographics/kaggle_data_analysis_04072020.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/kaggle_data_analysis_04072020.ipynb

ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/readme.md /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/readme.md

ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/requirements.txt /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/requirements.txt

# copy premade notebooks
ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/jhu-summary-overview/COVID-19-JHU_data_analysis_04072020.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/COVID-19-JHU_data_analysis.ipynb

ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/kaggle-demographics/kaggle_data_analysis_04072020.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/kaggle_data_analysis.ipynb

ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/chicago-seir-forecast/covid19_seir.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/covid19_seir.ipynb

Expand All @@ -30,11 +32,14 @@ RUN touch /home/jovyan/covid19-notebook/seir_diagram.png
ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/ctp_testing/CTP_testing.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/CTP_testing.ipynb

ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/TCGA_OV_COVID_tested.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/TCGA_OV_COVID_tested.ipynb
ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/TCGA_OV_COVID_0722.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/TCGA_OV_COVID.ipynb

ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/symptoms_and_fatality_covid19_0722.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/symptoms_and_fatality_covid19.ipynb

ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/symptoms_and_fatality_covid19_tested.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/symptoms_and_fatality_covid19_tested.ipynb
ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/SSR/SSR_notebook.ipynb /home/jovyan/covid19-notebook/
RUN touch /home/jovyan/covid19-notebook/SSR_notebook.ipynb

RUN chown -R jovyan:users /home/jovyan/covid19-notebook

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