Remove Travis, add GH Action for Unit Test

Change test db to postgres

Adding code coverage

Fix coverage report

.github/workflows/buildpipeline.yaml → .github/workflows/ci.yaml

@@ -1,25 +1,29 @@
 name: CI
-
 on:
-    push:
+  push:
     pull_request:
       types: [opened, reopened]
-
 concurrency:
   group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}'
   cancel-in-progress: true
-
-
 jobs:
   Security:
     name: Security Pipeline
     uses: uc-cdis/.github/.github/workflows/securitypipeline.yaml@master
+    with:
+       python-poetry: 'false'
     secrets: inherit
 
+  UnitTest:
+    name: Python Unit Test with Postgres
+    uses: uc-cdis/.github/.github/workflows/python_unit_test.yaml@master
+    with:
+       python-version: '3.9'
+       test-script: 'tests/ci_commands_script.sh'
+       run-coveralls: true
   ci:
     name: Build Image and Push
-    # TODO Add this line back once we update to Python 3.9 from 3.6
-    # needs: Security
+    needs: Security
     uses: uc-cdis/.github/.github/workflows/image_build_push.yaml@master
     secrets:
       ECR_AWS_ACCESS_KEY_ID: ${{ secrets.ECR_AWS_ACCESS_KEY_ID }}

.secrets.baseline

@@ -124,6 +124,15 @@
         "line_number": 17
       }
     ],
+    ".github/workflows/ci.yaml": [
+      {
+        "type": "Secret Keyword",
+        "filename": ".github/workflows/ci.yaml",
+        "hashed_secret": "3e26d6750975d678acb8fa35a0f69237881576b0",
+        "is_verified": false,
+        "line_number": 15
+      }
+    ],
     "deployment/scripts/postgresql/postgresql_init.sql": [
       {
         "type": "Secret Keyword",
@@ -386,5 +395,5 @@
       }
     ]
   },
-  "generated_at": "2023-08-08T00:23:28Z"
+  "generated_at": "2023-09-27T23:07:05Z"
 }

tests/ci_commands_script.sh

@@ -0,0 +1,3 @@
+#!/usr/bin/env bash
+
+poetry run pytest -vv --cov=fence --cov-report xml tests

tests/test-fence-config.yaml

@@ -28,7 +28,7 @@ BASE_URL: 'http://localhost/user'
 # postgres db to connect to
 # connection url format:
 #     postgresql://[user[:password]@][netloc][:port][/dbname]
-DB: 'postgresql://postgres:postgres@localhost:5432/fence_test_tmp'
+DB: 'postgresql://postgres:postgres@localhost:5432/postgres'
 
 # A URL-safe base64-encoded 32-byte key for encrypting keys in db
 # in python you can use the following script to generate one: