log (moPepGen): added fuzz test log

uclahs-cds · Dec 22, 2023 · 4e854ed · 4e854ed
1 parent e7a4096
commit 4e854ed
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diff --git a/docs/files/fuzz_test_history.tsv b/docs/files/fuzz_test_history.tsv
@@ -26,3 +26,6 @@ v1.2.0	aca093e	2023-09-21	comprehensive	184432	1	0	0:00:00.348405	1.459285447300
 v1.2.0	8bb50b1	2023-10-03	snv	298799	0	0	0:00:00.148556	0.3663789187817885	0:00:56.622936	118.54456105047444
 v1.2.0	8bb50b1	2023-10-03	indel	295046	0	0	0:00:00.200385	0.41735107691824685	0:00:42.615877	100.6975160415037
 v1.2.0	8bb50b1	2023-10-03	comprehensive	562642	0	0	0:00:00.360436	1.536579515902589	0:00:41.751076	182.56285717474975
+v1.2.1	e7a4096	2023-11-28	snv	277035	0	0	0:00:00.138178	0.36248703508333757	0:00:56.331649	118.07408019871977
+v1.2.1	e7a4096	2023-11-28	indel	275106	0	0	0:00:00.196090	0.41617068589153344	0:00:41.637490	99.04928608751558
+v1.2.1	e7a4096	2023-11-28	comprehensive	522929	0	0	0:00:00.378236	15.50100807513127	0:00:41.256473	179.70483365195142
diff --git a/moPepGen/util/brute_force.py b/moPepGen/util/brute_force.py
@@ -937,7 +937,7 @@ def call_peptides_main(self, variants:seqvar.VariantRecordPool,
 
         sec_positions = [] if is_circ_rna else \
             self.get_sec_positions(variant_coordinates)
-        variant_effects = self.check_variant_effect(seq, variant_coordinates)
+        variant_effects = self.check_variant_effect(str(seq), variant_coordinates)
         stop_lost, stop_gain, silent_mutation = variant_effects
 
         if not (is_coding and is_mrna_end_nf):