Library ready.

LICENSE.txt

@@ -18,4 +18,4 @@ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
+SOFTWARE. 

README.md

@@ -40,5 +40,5 @@ Use the same setup as HyperNEAT except for:
 
 If one is trying to solve an experiment defined by the [OpenAI Gym](https://gym.openai.com/) it is even easier to experiment. In the `shared` module a file called `gym_runner` is able to do most of the work. Given the number of generations, the environment to run, a configuration file, and a substrate, the relevant runner will take care of everything regarding population, fitness function etc.
 
-Please refer to the sample experiments included for further details on experimenting.
+Please refer to the sample experiments included for further details on experimenting. 
 

pureples/__init__.py

@@ -1,4 +1,4 @@
-import pureples.shared as shared
+import pureples.shared as shared 
 import pureples.hyperneat as hyperneat
 import pureples.es_hyperneat as es_hyperneat
 

pureples/es_hyperneat/__init__.py

@@ -1 +1 @@
-from pureples.es_hyperneat.es_hyperneat import ESNetwork, find_pattern
+from pureples.es_hyperneat.es_hyperneat import ESNetwork, find_pattern 

pureples/es_hyperneat/es_hyperneat.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import copy
 import numpy as np
 from pureples.hyperneat.hyperneat import query_cppn

pureples/experiments/mountain_car/config_cppn_mountain_car

@@ -1,4 +1,4 @@
-#--- parameters for the CPPN regarding the mountain car experiment ---#
+#--- parameters for the CPPN regarding the mountain car experiment  ---#
 
 [NEAT]
 fitness_criterion     = max

pureples/experiments/mountain_car/config_neat_mountain_car

@@ -1,4 +1,4 @@
-#--- parameters for the NEAT mountain car experiment ---#
+#--- parameters for the NEAT mountain car experiment  ---#
 
 [NEAT]
 fitness_criterion     = max

pureples/experiments/mountain_car/es_hyperneat_mountain_car_large.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/mountain_car/es_hyperneat_mountain_car_medium.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/mountain_car/es_hyperneat_mountain_car_small.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/mountain_car/hyperneat_mountain_car.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/mountain_car/neat_mountain_car.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/mountain_car/run_all_mountain_car.py

@@ -1,4 +1,4 @@
-import matplotlib
+import matplotlib 
 matplotlib.use('Agg')
 import matplotlib.pyplot as plt
 import neat_mountain_car

pureples/experiments/pole_balancing/config_cppn_pole_balancing

@@ -1,4 +1,4 @@
-#--- parameters for the CPPN regarding the single pole balancing experiment ---#
+#--- parameters for the CPPN regarding the single pole balancing experiment  ---#
 
 [NEAT]
 fitness_criterion     = max

pureples/experiments/pole_balancing/config_neat_pole_balancing

@@ -1,4 +1,4 @@
-#--- parameters for the NEAT single pole balancing experiment ---#
+#--- parameters for the NEAT single pole balancing experiment  ---#
 
 [NEAT]
 fitness_criterion     = max

pureples/experiments/pole_balancing/es_hyperneat_pole_balancing_large.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/pole_balancing/es_hyperneat_pole_balancing_medium.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/pole_balancing/es_hyperneat_pole_balancing_small.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/pole_balancing/hyperneat_pole_balancing.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/pole_balancing/neat_pole_balancing.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import logging
 import cPickle as pickle
 import gym

pureples/experiments/pole_balancing/run_all_pole_balancing.py

@@ -1,4 +1,4 @@
-import matplotlib
+import matplotlib 
 matplotlib.use('Agg')
 import matplotlib.pyplot as plt
 import neat_pole_balancing

pureples/experiments/xor/config_cppn_xor

@@ -1,4 +1,4 @@
-#--- parameters for the CPPN related to the XOR experiment ---#
+#--- parameters for the CPPN related to the XOR experiment  ---#
 
 [NEAT]
 fitness_criterion     = max

pureples/experiments/xor/config_neat_xor

@@ -1,4 +1,4 @@
-#--- parameters for the NEAT XOR experiment ---#
+#--- parameters for the NEAT XOR experiment  ---#
 
 [NEAT]
 fitness_criterion     = max

pureples/experiments/xor/es_hyperneat_xor_large.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import neat.nn
 import cPickle as pickle
 from pureples.shared.substrate import Substrate

pureples/experiments/xor/es_hyperneat_xor_medium.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import neat.nn
 import cPickle as pickle
 from pureples.shared.substrate import Substrate

pureples/experiments/xor/es_hyperneat_xor_small.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import neat.nn
 import cPickle as pickle
 from pureples.shared.substrate import Substrate

pureples/experiments/xor/hyperneat_xor.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import neat.nn
 import cPickle as pickle
 from pureples.shared.visualize import draw_net

pureples/experiments/xor/neat_xor.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import neat.nn
 import cPickle as pickle
 import sys

pureples/experiments/xor/run_all_xor.py

@@ -1,4 +1,4 @@
-import matplotlib
+import matplotlib 
 matplotlib.use('Agg')
 import matplotlib.pyplot as plt
 import neat_xor

pureples/hyperneat/__init__.py

@@ -1,2 +1,2 @@
-from pureples.hyperneat.hyperneat import create_phenotype_network
+from pureples.hyperneat.hyperneat import create_phenotype_network 
 

pureples/hyperneat/hyperneat.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 
 
 # Creates a recurrent network using a cppn and a substrate.

pureples/shared/__init__.py

@@ -1,4 +1,4 @@
-from pureples.shared.gym_runner import run_es, run_hyper, run_neat
+from pureples.shared.gym_runner import run_es, run_hyper, run_neat 
 from pureples.shared.visualize import draw_net, draw_pattern, draw_es
 from pureples.shared.substrate import Substrate
 

pureples/shared/gym_runner.py

@@ -1,4 +1,4 @@
-import neat
+import neat 
 import numpy as np
 from pureples.hyperneat.hyperneat import create_phenotype_network
 from pureples.es_hyperneat.es_hyperneat import ESNetwork

pureples/shared/substrate.py

@@ -5,3 +5,4 @@ def __init__(self, input_coordinates, output_coordinates, hidden_coordinates=(),
         self.hidden_coordinates = hidden_coordinates        
         self.output_coordinates = output_coordinates
         self.res = res
+

pureples/shared/test_cppn.py

@@ -1,4 +1,4 @@
-import cPickle as pickle
+import cPickle as pickle 
 from pureples.es_hyperneat.es_hyperneat import find_pattern
 from pureples.shared.visualize import draw_pattern
 

pureples/shared/visualize.py

@@ -1,4 +1,4 @@
-import graphviz
+import graphviz 
 import matplotlib.pyplot as plt
 import cPickle as pickle
 

setup.py

@@ -3,7 +3,7 @@
 setup(
     name='pureples',
     version='0.0',
-    author='simon, adrian',
+    author='adrian, simon',
     author_email='[email protected]',
     maintainer='simon, adrian',
     maintainer_email='[email protected]',