Skip to content
@umccr

UMCCR

University of Melbourne Centre for Cancer Research

Pinned Loading

  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 40 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 10 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 9 2

  4. data-portal-apis data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    Python 1

  5. orcabus orcabus Public

    Ā šŸ‹ UMCCR Pipeline & Workflow Orchestration

    Python 4

  6. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 7 4

Repositories

Showing 10 of 94 repositories
  • orcabus Public

    Ā šŸ‹ UMCCR Pipeline & Workflow Orchestration

    umccr/orcabusā€™s past year of commit activity
    Python 4 0 52 (1 issue needs help) 4 Updated Jan 15, 2025
  • orca-ui Public
    umccr/orca-uiā€™s past year of commit activity
    TypeScript 0 MIT 0 20 (1 issue needs help) 2 Updated Jan 15, 2025
  • crypt4gh-rust Public Forked from EGA-archive/crypt4gh-rust

    Rust implementation for the Crypt4GH encryption format

    umccr/crypt4gh-rustā€™s past year of commit activity
    Rust 0 2 0 1 Updated Jan 15, 2025
  • dracarys Public

    šŸ² DRAGEN workflow tidying šŸ”„

    umccr/dracarysā€™s past year of commit activity
    R 0 0 26 0 Updated Jan 14, 2025
  • cwl-novice-tutorial Public

    CWL Novice Tutorial

    umccr/cwl-novice-tutorialā€™s past year of commit activity
    HTML 0 0 0 0 Updated Jan 14, 2025
  • orcahouse Public

    šŸ³ UMCCR Pipeline & Workflow Data Warehouse

    umccr/orcahouseā€™s past year of commit activity
    HCL 0 0 1 0 Updated Jan 12, 2025
  • infrastructure Public

    Infrastructure as Code at UMCCR

    umccr/infrastructureā€™s past year of commit activity
    Python 10 8 14 4 Updated Jan 11, 2025
  • htsget-deploy Public

    Deployment logic for htsget-rs

    umccr/htsget-deployā€™s past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Jan 9, 2025
  • umccr/samplesheet-check-backendā€™s past year of commit activity
    Python 0 0 2 1 Updated Jan 9, 2025
  • umccr/samplesheet-check-frontendā€™s past year of commit activity
    JavaScript 0 0 2 3 Updated Jan 9, 2025