💊 weaken the h5 dependency and automatically document package by roxy…

…gen2
velocyto-team · Oct 22, 2018 · f188673 · f188673
1 parent 3690aa8
commit f188673
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Showing 4 changed files with 3 additions and 7 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -34,4 +34,4 @@ Suggests:
   edgeR,
   h5
 LinkingTo: Rcpp, RcppArmadillo
-RoxygenNote: 6.0.1
+RoxygenNote: 6.1.0
diff --git a/NAMESPACE b/NAMESPACE
@@ -28,9 +28,6 @@ importFrom(Rcpp,evalCpp)
 importFrom(cluster,pam)
 importFrom(grDevices,adjustcolor)
 importFrom(grDevices,colorRampPalette)
-importFrom(h5,h5close)
-importFrom(h5,h5file)
-importFrom(h5,list.datasets)
 importFrom(methods,as)
 importFrom(mgcv,gam)
 importFrom(mgcv,s)

diff --git a/R/momentum_routines.R b/R/momentum_routines.R
@@ -14,14 +14,13 @@
 #//' @importFrom GenomicRanges GRanges
 #//' @importFrom IRanges IRanges
 #//' @importFrom data.table fread
-#' @importFrom h5 h5file h5close list.datasets
 #' @importFrom methods as
 NULL
 
 # optional imports
 # @import igraph
 # @importFrom abind abind
-# @import h5
+# @import hdf5r
 # @importFrom edgeR calcNormFactors
 # @import GenomicAlignments
 # @import Rsamtools

diff --git a/man/global.velcoity.estimates.Rd b/man/global.velcoity.estimates.Rd