Merge pull request #144 from venpopov/feature/37-summary-method-for-b…

…mmfit

Summary method for bmmfit

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: bmm
 Title: Easy and Accesible Bayesian Measurement Models using 'brms'
-Version: 0.4.2.9000
+Version: 0.4.3.9000
 Authors@R: c(
     person("Vencislav", "Popov", , "[email protected]", role = c("aut", "cre", "cph")),
     person("Gidon", "Frischkorn", , "[email protected]", role = c("aut", "cph")),
@@ -19,7 +19,6 @@ Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.1
 Suggests: 
     testthat (>= 3.0.0),
-    glue,
     usethis,
     knitr,
     rmarkdown,
@@ -31,18 +30,21 @@ Suggests:
     cowplot,
     stringr,
     remotes, 
-    waldo
+    waldo,
+    fansi
 Config/testthat/edition: 3
 Imports: 
     magrittr,
+    glue,
     parallel,
     dplyr,
     withr,
     tidyr,
     stats,
     matrixStats,
     crayon,
-    methods
+    methods,
+    assertthat
 URL: https://github.com/venpopov/bmm, https://venpopov.github.io/bmm/
 BugReports: https://github.com/venpopov/bmm/issues
 Additional_repositories:

NAMESPACE

@@ -2,6 +2,8 @@
 
 S3method("+",bmmformula)
 S3method("[",bmmformula)
+S3method(add_links,bmmfit)
+S3method(add_links,bmmmodel)
 S3method(bmf2bf,bmmmodel)
 S3method(check_data,IMMspatial)
 S3method(check_data,bmmmodel)
@@ -26,17 +28,22 @@ S3method(identical,bmmformula)
 S3method(identical,brmsformula)
 S3method(identical,default)
 S3method(identical,formula)
+S3method(is_nl,bmmformula)
+S3method(is_nl,formula)
 S3method(model_info,bmmmodel)
 S3method(postprocess_brm,bmmmodel)
 S3method(postprocess_brm,default)
 S3method(postprocess_brm,sdmSimple)
+S3method(print,bmmsummary)
 S3method(print,message)
 S3method(revert_postprocess_brm,default)
 S3method(revert_postprocess_brm,sdmSimple)
 S3method(rhs_vars,bmmformula)
 S3method(rhs_vars,formula)
 S3method(stancode,bmmformula)
 S3method(standata,bmmformula)
+S3method(summarise_model,bmmmodel)
+S3method(summary,bmmfit)
 S3method(update,bmmfit)
 export("%>%")
 export(IMMabc)
@@ -88,7 +95,9 @@ export(softmaxinv)
 export(supported_models)
 export(use_model_template)
 export(wrap)
-importFrom(brms,save_pars)
+import(stats)
+importFrom(assertthat,assert_that)
 importFrom(brms,stancode)
 importFrom(brms,standata)
+importFrom(glue,glue)
 importFrom(magrittr,"%>%")

NEWS.md

@@ -1,6 +1,8 @@
 # bmm 0.4.0+
 
 ### New features
+* add a custom summary() method for bmm models
+* add a global options bmm.summary_backend to control the backend used for the summary() method (choices are "bmm" and "brms")
 * deprecate get_model_prior(), get_stancode() and get_standata(). These functions will be removed in future versions of the package. Due to [recent changes](https://github.com/paul-buerkner/brms/pull/1604) in *brms* version 2.20.14, you can now use the *brms* functions `default_prior`, `stancode` and `standata` directly with *bmm* models (alternatively, their older aliases, "get_prior", "make_stancode", "make_standata").
 
 # bmm 0.4.0

R/bmm-package.R

@@ -2,6 +2,8 @@
 "_PACKAGE"
 
 ## usethis namespace: start
-#' @importFrom brms save_pars
+#' @importFrom glue glue
+#' @import stats
+#'
 ## usethis namespace: end
 NULL