Merge pull request #68 from venpopov/feature/issue-61-add-github-acti…

…on-to-run-check-on-pull-requests

Feature/issue 61 add GitHub action to run check on pull requests

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,47 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [master, develop]
+  pull_request:
+    branches: [master, develop]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true

.github/workflows/pkgdown.yaml

@@ -4,7 +4,7 @@ on:
   push:
     branches: [master, develop]
   pull_request:
-    branches: [master, develop]
+    branches: [master]
   release:
     types: [published]
   workflow_dispatch:

.github/workflows/test-coverage.yaml

@@ -0,0 +1,50 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [master, develop]
+  pull_request:
+    branches: [master, develop]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr
+          needs: coverage
+
+      - name: Test coverage
+        run: |
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

README.Rmd

@@ -10,7 +10,10 @@ knitr::opts_chunk$set(
   out.width = "100%"
 )
 ```
-# bmm <!-- badges: start --> <!-- badges: end --> 
+# bmm   <!-- badges: start -->
+  [![R-CMD-check](https://github.com/venpopov/bmm/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/venpopov/bmm/actions/workflows/R-CMD-check.yaml)
+  [![test-coverage](https://github.com/venpopov/bmm/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/venpopov/bmm/actions/workflows/test-coverage.yaml)
+<!-- badges: end -->
 
 The goal of bmm (Bayesian Measurement Models) is to make it easier to estimate 
 common measurement models for behavioral research using Bayesian hierarhical 

README.md

@@ -1,7 +1,11 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-# bmm <!-- badges: start --> <!-- badges: end -->
+# bmm <!-- badges: start -->
+
+[![R-CMD-check](https://github.com/venpopov/bmm/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/venpopov/bmm/actions/workflows/R-CMD-check.yaml)
+[![test-coverage](https://github.com/venpopov/bmm/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/venpopov/bmm/actions/workflows/test-coverage.yaml)
+<!-- badges: end -->
 
 The goal of bmm (Bayesian Measurement Models) is to make it easier to
 estimate common measurement models for behavioral research using
@@ -76,13 +80,13 @@ library(bmm)
 library(tidyverse)
 dat <- gen_3p_data(N=2000, pmem=0.6, pnt=0.3, kappa=10, setsize=4, relative_resp=T)
 head(dat)
-#>              y    nt1_loc    nt2_loc   nt3_loc
-#> 1 -0.142526610  2.1500293 -0.6441928 0.9517516
-#> 2  0.007518355 -3.0287546 -2.9828635 2.0714670
-#> 3  0.018662539 -1.3783199  1.0946707 1.2723605
-#> 4 -0.004285611  1.7142538 -1.8425466 0.7009981
-#> 5  0.396037655 -0.7615063  1.6378873 2.8464744
-#> 6 -0.411727832 -0.9225579  2.5400559 3.0250659
+#>             y    nt1_loc     nt2_loc    nt3_loc
+#> 1  0.51775824  1.0020511  0.76339413 -1.2897954
+#> 2  0.03960327 -0.6206519  1.09208784 -0.8679937
+#> 3 -0.48213423  1.1447270  2.81885045 -1.4363374
+#> 4 -0.34510101  2.7482095 -0.06612305  2.0340003
+#> 5  0.09348744 -1.3952246  2.17738363  0.7796131
+#> 6  0.39001975 -0.8049496  2.07371921 -1.1887811
 ```
 
 We have a dataset of 2000 observations of response error, of which 60%