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fix links to vignettes
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venpopov committed Mar 25, 2024
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2 changes: 1 addition & 1 deletion R/bmm_model_sdmSimple.R
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Expand Up @@ -49,7 +49,7 @@

#' @title `r .model_sdmSimple()$name`
#' @name SDM
#' @details see `vignette("sdm-simple")` for a detailed description of the model
#' @details see `vignette("bmm_sdm_simple")` for a detailed description of the model
#' and how to use it.
#' `r model_info(.model_sdmSimple())`
#' @param resp_err The name of the variable in the dataset containing the
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4 changes: 2 additions & 2 deletions R/distributions.R
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Expand Up @@ -16,7 +16,7 @@
#' @param kappa Vector of precision values
#' @param log Logical; if `TRUE`, values are returned on the log scale.
#' @param parametrization Character; either `"bessel"` or `"sqrtexp"`
#' (default). See `vignette("sdm-simple")` for details on the
#' (default). See `vignette("bmm_sdm_simple")` for details on the
#' parameterization.
#' @param log.p Logical; if `TRUE`, probabilities are returned on the log
#' scale.
Expand All @@ -36,7 +36,7 @@
#'
#' @details **Parametrization**
#'
#' See `vignette("sdm-simple")` for details on the parameterization.
#' See `vignette("bmm_sdm_simple")` for details on the parameterization.
#' Oberauer (2023) introduced the SDM with the bessel parametrization. The
#' sqrtexp parametrization is the default in the `bmm` package for
#' numerical stability and efficiency. The two parametrizations are related by
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2 changes: 1 addition & 1 deletion R/helpers-parameters.R
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Expand Up @@ -43,7 +43,7 @@ k2sd <- function(K) {
#' `c_sqrtexp2bessel` converts from the sqrtexp parametrization to the
#' bessel parametrization.
#' @keywords transform
#' @details See `vignette("sdm-simple")` for details on the
#' @details See `vignette("bmm_sdm_simple")` for details on the
#' parameterization. The sqrtexp parametrization is the default in the
#' `bmm` package.
#' @export
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2 changes: 1 addition & 1 deletion README.Rmd
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Expand Up @@ -179,7 +179,7 @@ data <- OberauerLin_2017
For this quick example, we will show how to setup fitting the Interference
Measurement Model to this data. If you want a detailed description of this model
and and in depth explanation of the parameters estimated in the model, please
have a look at `vignette("IMM")`.
have a look at `vignette("bmm_imm")`.

``` r
model_formula <- bmmformula(c ~ 0 + set_size,
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -196,7 +196,7 @@ data <- OberauerLin_2017
For this quick example, we will show how to setup fitting the
Interference Measurement Model to this data. If you want a detailed
description of this model and and in depth explanation of the parameters
estimated in the model, please have a look at `vignette("IMM")`.
estimated in the model, please have a look at `vignette("bmm_imm")`.

``` r
model_formula <- bmmformula(c ~ 0 + set_size,
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2 changes: 1 addition & 1 deletion man/SDM.Rd

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4 changes: 2 additions & 2 deletions man/SDMdist.Rd

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2 changes: 1 addition & 1 deletion man/c_parametrizations.Rd

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8 changes: 4 additions & 4 deletions vignettes/articles/bmm_vwm_crt.Rmd
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Expand Up @@ -51,19 +51,19 @@ The `bmm` package implements several measurement models for analyzing continuous

#### The two-parameter mixture model [@Zhang_Luck_2008] {.unnumbered}

- see `?mixture2p` and `vignette("mixture_models")`
- see `?mixture2p` and `vignette("bmm_mixture_models")`

#### The three-parameter mixture model [@Bays_Catalao_Husain_2009] {.unnumbered}

- see `?mixture3p` and `vignette("mixture_models")`
- see `?mixture3p` and `vignette("bmm_mixture_models")`

#### The Interference Measurement Model [@Oberauer_Lin_2017] {.unnumbered}

- see `?IMM` and `vignette("IMM")`
- see `?IMM` and `vignette("bmm_imm")`

#### The Signal Discrimination Model (SDM) by [@Oberauer_2023] {.unnumbered}

- see `?sdmSimple` and `vignette("sdm-simple")`
- see `?sdmSimple` and `vignette("bmm_sdm_simple")`


# References
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2 changes: 1 addition & 1 deletion vignettes/bmm_bmmformula.Rmd
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Expand Up @@ -155,7 +155,7 @@ my_formula <- bmf(
bmmfit <- bmm:::bmmfit_mixture2p_vignette
```

Let's assume you have fit a `mixture2p` model to a data set `my_data` as in the `vignette("mixture_models")`. For this, you had to specify a `bmmformula` and model object:
Let's assume you have fit a `mixture2p` model to a data set `my_data` as in the `vignette("bmm_mixture_models")`. For this, you had to specify a `bmmformula` and model object:

```r
user_formula <- bmf(
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