Skip to content

Commit

Permalink
use original passing transcript
Browse files Browse the repository at this point in the history
  • Loading branch information
@faithokamoto
faithokamoto authored Dec 7, 2024
1 parent 553cf20 commit 11904da
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions src/unittest/transcriptome.cpp
View file
Original file line number Diff line number Diff line change
Expand Up @@ -503,9 +503,12 @@ namespace vg {
transcript_stream2 << "path1\t.\texon\t2\t7\t.\t+\t.\ttranscript_id=transcript1;exon_number=1" << endl;
transcript_stream2 << "path1\t.\texon\t19\t21\t.\t+\t.\ttranscript_id=transcript1;exon_number=3" << endl;
transcript_stream2 << "path1\t.\texon\t16\t21\t.\t-\t.\tID=exon:transcript2:0;transcript_id=transcript2;" << endl;
transcript_stream2 << "path1\t.\texon\t2\t7\t.\t-\t.\tID=exon:transcript2:1;transcript_id=transcript2" << endl;
transcript_stream2 << "path1\t.\texon\t18\t21\t.\t+\t.\texon_number=2;transcript_id=transcript3" << endl;
transcript_stream2 << "path1\t.\texon\t8\t9\t.\t-\t.\tID=exon:transcript2:1;transcript_id=transcript2" << endl;
transcript_stream2 << "path1\t.\texon\t2\t7\t.\t-\t.\tID=exon:transcript2:2;transcript_id=transcript2" << endl;
transcript_stream2 << "path1\t.\texon\t9\t11\t.\t+\t.\texon_number=1;transcript_id=transcript3" << endl;
transcript_stream2 << "path1\t.\texon\t18\t21\t.\t+\t.\texon_number=2;transcript_id=transcript3" << endl;
transcript_stream2 << "path1\t.\texon\t8\t10\t.\t+\t.\ttranscript_id=transcript4" << endl;
transcript_stream2 << "path1\t.\texon\t3\t6\t.\t+\t.\ttranscript_id=transcript4" << endl;

transcriptome.add_reference_transcripts(vector<istream *>({&transcript_stream2}), empty_haplotype_index, false, false);

Expand Down

1 comment on commit 11904da

@adamnovak
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

vg CI tests complete for branch flexible-exon-numbering. View the full report here.

16 tests passed, 0 tests failed and 0 tests skipped in 17383 seconds

Please sign in to comment.