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Remove unused unit test
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@xchang1
xchang1 committed Jan 6, 2025
1 parent 4a6a3af commit b6277b9
Showing 1 changed file with 46 additions and 46 deletions.
92 changes: 46 additions & 46 deletions src/unittest/snarl_seed_clusterer.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -3328,61 +3328,61 @@ namespace unittest {
// REQUIRE(clusters.size() == 1);
//}//end test case

TEST_CASE("Failed graph", "[failed_cluster]"){

HashGraph graph;
graph.deserialize("testGraph.hg");
IntegratedSnarlFinder snarl_finder(graph);
SnarlDistanceIndex dist_index;
fill_in_distance_index(&dist_index, &graph, &snarl_finder);
//TEST_CASE("Failed graph", "[failed_cluster]"){

// HashGraph graph;
// graph.deserialize("testGraph.hg");
// IntegratedSnarlFinder snarl_finder(graph);
// SnarlDistanceIndex dist_index;
// fill_in_distance_index(&dist_index, &graph, &snarl_finder);

dist_index.print_self();

SnarlDistanceIndexClusterer clusterer(dist_index, &graph);
// dist_index.print_self();

// SnarlDistanceIndexClusterer clusterer(dist_index, &graph);


vector<vector<pos_t>> pos_ts(2);
pos_ts[0].emplace_back(15, false, 9);
pos_ts[0].emplace_back(19, false, 23);
pos_ts[0].emplace_back(12, false, 4);
pos_ts[0].emplace_back(7, true, 2);
pos_ts[0].emplace_back(3, false, 16);
pos_ts[0].emplace_back(1, true, 6);
pos_ts[0].emplace_back(8, false, 10);
pos_ts[0].emplace_back(1, true, 2);
pos_ts[1].emplace_back(18, true, 0);
pos_ts[1].emplace_back(2, false, 0);
pos_ts[1].emplace_back(5, true, 19);
pos_ts[1].emplace_back(7, true, 9);
pos_ts[1].emplace_back(12, false, 9);
pos_ts[1].emplace_back(8, true, 14);
pos_ts[1].emplace_back(7, false, 7);
pos_ts[1].emplace_back(4, false, 2);
pos_ts[1].emplace_back(17, false, 42);
pos_ts[1].emplace_back(18, true, 0);
pos_ts[1].emplace_back(16, false, 3);
pos_ts[1].emplace_back(11, true, 16);
pos_ts[1].emplace_back(2, false, 0);

vector<vector<SnarlDistanceIndexClusterer::Seed>> seeds(2);
for (size_t read_num = 0 ; read_num < pos_ts.size() ; read_num++) {
for (pos_t pos : pos_ts[read_num]) {

ZipCode zipcode;
zipcode.fill_in_zipcode(dist_index, pos);
zipcode.fill_in_full_decoder();
seeds[read_num].push_back({ pos, 0, zipcode});
}
}
// vector<vector<pos_t>> pos_ts(2);
// pos_ts[0].emplace_back(15, false, 9);
// pos_ts[0].emplace_back(19, false, 23);
// pos_ts[0].emplace_back(12, false, 4);
// pos_ts[0].emplace_back(7, true, 2);
// pos_ts[0].emplace_back(3, false, 16);
// pos_ts[0].emplace_back(1, true, 6);
// pos_ts[0].emplace_back(8, false, 10);
// pos_ts[0].emplace_back(1, true, 2);
// pos_ts[1].emplace_back(18, true, 0);
// pos_ts[1].emplace_back(2, false, 0);
// pos_ts[1].emplace_back(5, true, 19);
// pos_ts[1].emplace_back(7, true, 9);
// pos_ts[1].emplace_back(12, false, 9);
// pos_ts[1].emplace_back(8, true, 14);
// pos_ts[1].emplace_back(7, false, 7);
// pos_ts[1].emplace_back(4, false, 2);
// pos_ts[1].emplace_back(17, false, 42);
// pos_ts[1].emplace_back(18, true, 0);
// pos_ts[1].emplace_back(16, false, 3);
// pos_ts[1].emplace_back(11, true, 16);
// pos_ts[1].emplace_back(2, false, 0);

// vector<vector<SnarlDistanceIndexClusterer::Seed>> seeds(2);
// for (size_t read_num = 0 ; read_num < pos_ts.size() ; read_num++) {
// for (pos_t pos : pos_ts[read_num]) {

// ZipCode zipcode;
// zipcode.fill_in_zipcode(dist_index, pos);
// zipcode.fill_in_full_decoder();
// seeds[read_num].push_back({ pos, 0, zipcode});
// }
// }

vector<vector<SnarlDistanceIndexClusterer::Cluster>> clusters = clusterer.cluster_seeds(seeds, 15, 35);
// vector<vector<SnarlDistanceIndexClusterer::Cluster>> clusters = clusterer.cluster_seeds(seeds, 15, 35);

REQUIRE(clusters.size() == 2);

REQUIRE(false);
}
// REQUIRE(clusters.size() == 2);
//
// REQUIRE(false);
//}
TEST_CASE("Random graphs", "[cluster][cluster_random]"){


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@adamnovak
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vg CI tests complete for branch lr-giraffe. View the full report here.

16 tests passed, 0 tests failed and 0 tests skipped in 17340 seconds

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