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Log potentially wrong error message
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@adamnovak
adamnovak committed Jan 23, 2025
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Expand Up @@ -202,6 +202,7 @@ is "${?}" "1" "Surjection fails when using the wrong graph for GAM"
is "$(cat err.txt | grep 'cannot be interpreted' | wc -l)" "1" "Surjection of GAM to the wrong graph reports the problem"
vg surject -x tiny.vg -s -t 1 -m mapped.gamp >/dev/null 2>err.txt
is "${?}" "1" "Surjection fails when using the wrong graph for GAMP"
cat err.txt 1>&2
is "$(cat err.txt | grep 'cannot be interpreted' | wc -l)" "1" "Surjection of GAMP to the wrong graph reports the problem"

rm x.vg x.pathdup.vg x.xg x.gcsa x.gcsa.lcp x.gam mapped.gam mapped.gamp tiny.vg err.txt
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vg CI tests complete for branch autoindex-gbz. View the full report here.

16 tests passed, 0 tests failed and 0 tests skipped in 17583 seconds

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