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fix bug in nested deconstrution #4464

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merged 1 commit into from
Dec 3, 2024
Merged

fix bug in nested deconstrution #4464

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14 changes: 9 additions & 5 deletions src/traversal_clusters.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -235,10 +235,10 @@ vector<vector<int>> assign_child_snarls_to_traversals(const PathHandleGraph* gra
const vector<pair<handle_t, handle_t>>& child_snarls) {

// index the child snarls
unordered_map<handle_t, int> handle_to_child;
unordered_map<handle_t, vector<int>> handle_to_child;
for (int64_t i = 0; i < child_snarls.size(); ++i) {
handle_to_child[child_snarls[i].first] = i;
handle_to_child[child_snarls[i].second] = i;
handle_to_child[child_snarls[i].first].push_back(i);
handle_to_child[child_snarls[i].second].push_back(i);
}

// use the index to find which snarls are fully contained in a given traversal
Expand All @@ -248,11 +248,15 @@ vector<vector<int>> assign_child_snarls_to_traversals(const PathHandleGraph* gra
map<int, int> rv_count;
for (const handle_t& handle : trav) {
if (handle_to_child.count(handle)) {
fw_count[handle_to_child[handle]] += 1;
for (int child : handle_to_child[handle]) {
fw_count[child] += 1;
}
}
handle_t rhandle = graph->flip(handle);
if (handle_to_child.count(rhandle)) {
rv_count[handle_to_child[rhandle]] += 1;
for (int child : handle_to_child[handle]) {
rv_count[child] += 1;
}
}
}
vector<int> contained_snarls;
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