Code

Distanceless index#4466

Code

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xchang1 merged 10 commits intomastervgteam/vg:masterfrom distanceless-indexvgteam/vg:distanceless-indexCopy head branch name to clipboardDec 9, 2024

+90-37

Commits

Commits on Nov 27, 2024

• Update libbdsg and add unused option to only store distances along the top-level chain

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  5f1dc81

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• Add option to not store nested distances

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  64d7e82

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• add unit test for top-level only distances

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  13c08f2

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• TUrn off random unit tests

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  77a9826

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• Fix index subcommand

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  33bc76e

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Commits on Dec 1, 2024

• Don't reserve space for distances in a snarl if we arent going to save them

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  5a915dd

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Commits on Dec 3, 2024

• Update libbdsg to estimate the size of distanceless indexes better

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Commits on Dec 6, 2024

• Update libbdsg to get the python bindings to work

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  0916459

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• Use one vector for all chain distances when building the distance index

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  fc1a6a3

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• Undo last commit because it has the same problem that I literally just had with python bindings

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