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vgteam / vg Public

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Keep haplotypes in `vg chunk` that don't extend far enough#4501

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adamnovak wants to merge 7 commits intomastervgteam/vg:masterfrom fix-chunk-haplotypesvgteam/vg:fix-chunk-haplotypesCopy head branch name to clipboard

+209-90

Conversation Commits7 (7)Checks Files changed

Commits

Commits on Jan 21, 2025

Refactor haplotype/path chunking/tracing to be handle-based
adamnovak
committed
Fix compilation
adamnovak
committed
Include last hapolotype to drop as haplotype result
adamnovak
committed
Get haplotype results for haplotypes that stop in the middle while others go on
adamnovak
committed

Commits on Jan 23, 2025

Cut haplotypes leaving subgraph and don't lose path range end node
adamnovak
committed
Rename tests to be about GBWT
adamnovak
committed
Add learnings from Jouni about working with haplotypes that end
adamnovak
committed

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