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Faster GAF sorting #4505

Merged
merged 14 commits into from
Jan 26, 2025
2 changes: 1 addition & 1 deletion Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -537,7 +537,7 @@ test: $(BIN_DIR)/$(EXE) $(LIB_DIR)/libvg.a test/build_graph $(BIN_DIR)/shuf $(BI

# Somebody has been polluting the test directory with temporary files that are not deleted after the tests.
# To make git status more useful, we delete everything that looks like a temporary file.
clean-test:
clean-tests:
cd test && rm -rf tmp && mkdir tmp && mv 2_2.mat build_graph.cpp default.mat tmp && rm -f *.* && mv tmp/* . && rmdir tmp

docs: $(SRC_DIR)/*.cpp $(SRC_DIR)/*.hpp $(ALGORITHMS_SRC_DIR)/*.cpp $(ALGORITHMS_SRC_DIR)/*.hpp $(SUBCOMMAND_SRC_DIR)/*.cpp $(SUBCOMMAND_SRC_DIR)/*.hpp $(UNITTEST_SRC_DIR)/*.cpp $(UNITTEST_SRC_DIR)/*.hpp $(UNITTEST_SUPPORT_SRC_DIR)/*.cpp
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2 changes: 1 addition & 1 deletion deps/gbwt
2 changes: 1 addition & 1 deletion deps/gbwtgraph
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