Ribozilla

Flexible architecture for RNA-Seq pipeline development

Table of contents

• Introduction
• Pre-requisites
• Platforms
• Get the source code
• Building
• Development
• Screenshots

Introduction

Ribozilla is a GUI-based flexible architecture to develop RNA-Seq pipelines and setup analysis.

Ribozilla has own CLI to GUI Converter API, that takes CLI software parameters to be used in GUI to be setup and generates the scripts to run based on inputs. It works in Mac, Linux and Windows.

Platforms

You should be able to build Ribozilla on the following platforms:

• Windows 10
• macOS Sierra and later
• Linux

Pre-requisites

• Git
• Node.js x64 version >= 12.14.1
• Yarn
• Python x64 version >= 3.6.x

Get the source code

You can get the source code cloning the repository using the following command:

git clone https://github.com/wapablos/ribozilla.git
cd ribozilla
git submodule update --init

Building

Build software base and clui API

$ cd ribozilla
$ yarn install-dev

Then, build the extensions

$ cd ribozilla-extensions
$ yarn install && yarn build

Development

You can use any CLI software inside Ribozilla, using the ribozilla-clui-api to create it.

Screenshots

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