update changelog

CHANGELOG.md

@@ -1,5 +1,9 @@
 ## Master
+
+
+## Release 2.6.0
 * add evans index calculation
+* require torch < 2.6.0 to avoid weight loading error (waiting for nnU-Net to fix this issue)
 
 
 ## Release 2.5.0

README.md

@@ -189,7 +189,7 @@ If you want to combine some subclasses (e.g. lung lobes) into one binary mask (e
 totalseg_combine_masks -i totalsegmentator_output_dir -o combined_mask.nii.gz -m lungcomm 
 ```
 
-If you want to calculate the Evans index you can use the following command (currently only available in master branch):
+If you want to calculate the [Evans index](https://radiopaedia.org/articles/evans-index-2) you can use the following command:
 ```
 totalseg_evans_index -i ct_skull.nii.gz -o evans_index.json -p evans_index.png
 ```

resources/prepare_weights_for_release.sh

@@ -10,6 +10,7 @@ set -e  # Exit on error
 # todo: select as needed
 cd /mnt/nvme/data/multiseg/weights_upload/totalsegmentator_v2
 # cd /mnt/nvme/data/multiseg/weights_upload/totalsegmentator_mri
+# cd /mnt/nvme/data/multiseg/weights_upload/nnunet_modal
 
 # Process each dataset ID
 for dataset_id in "$@"; do

totalsegmentator/bin/totalseg_evans_index.py

@@ -309,7 +309,7 @@ def evans_index(ct_bytes, f_type, verbose=False):
 
 
 """
-cd ~/Downloads/evans_index/31103170_rot_large
+cd /mnt/nvme/data/test_data/evans_index/31103170_rot_large
 python ~/dev/TotalSegmentator/totalsegmentator/bin/totalseg_evans_index.py -i ct_sm.nii.gz -o evans_index.json -p evans_index.png
 python ~/dev/TotalSegmentator/totalsegmentator/bin/totalseg_evans_index.py -i ct_nonbrain.nii.gz -o evans_index_nonbrain.json -p evans_index_nonbrain.png
 """