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Update README.md reflecting the ownership change
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mvfki authored Dec 7, 2023
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<img src="docs/images/logo.png" align="right" width="120" />
<img src="docs/images/logo_bright.png" align="right" width="120" />

# CytoSimplex
[![Python3_10_test](https://github.com/mvfki/pyCytoSimplex/actions/workflows/python-package.yml/badge.svg)](https://github.com/mvfki/pyCytoSimplex/actions/workflows/python-package.yml)[![codecov](https://codecov.io/gh/mvfki/pyCytoSimplex/branch/main/graph/badge.svg?token=L839lYPVon)](https://codecov.io/gh/mvfki/pyCytoSimplex)[![AnnData-0.9.1](https://img.shields.io/badge/AnnData-0.9.1-blue)](https://pypi.org/project/anndata/)

[![Python3_10_test](https://github.com/welch-lab/pyCytoSimplex/actions/workflows/python-package.yml/badge.svg)](https://github.com/welch-lab/pyCytoSimplex/actions/workflows/python-package.yml)[![codecov](https://codecov.io/gh/mvfki/pyCytoSimplex/branch/main/graph/badge.svg?token=L839lYPVon)](https://codecov.io/gh/mvfki/pyCytoSimplex)[![AnnData-0.9.1](https://img.shields.io/badge/AnnData-0.9.1-blue)](https://pypi.org/project/anndata/)

"CytoSimplex" is a Python module that creates simplex plot showing similarity between single-cells and terminals represented by clusters of cells.
RNA velocity can be added as another layer of information.

For R users, we have an R package [CytoSimplex](https://github.com/mvfki/CytoSimplex) that provides the same functionalities.
For R users, we have an R package [CytoSimplex](https://github.com/welch-lab/CytoSimplex) that provides the same functionalities.

## Installation

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1. Download this package

```shell
git clone https://github.com/mvfki/pyCytoSimplex.git
git clone https://github.com/welch-lab/pyCytoSimplex.git
cd pyCytoSimplex
```

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