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Matiss Ozols committed Jan 2, 2025
1 parent a745839 commit e724767
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2 changes: 1 addition & 1 deletion assets/deploy_scripts/sanger_module_files/1.8
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Expand Up @@ -6,7 +6,7 @@ set version [file tail [module-info version [module-info name]]]

proc ModulesHelp { } {
global version
puts stderr "YASCP (Yet Another Single Cell (scRNA) Pieline: https://github.com/wtsi-hgi/yascp) is a nextflow pipeline that QCs the scRNA Cellranger data by removing ambient RNA, deconvoluting donors, assigning celltypes, analysing concordances vs expected genotypes. IMPROVEMENTS: 1) Doublet detection of any andata object."
puts stderr "YASCP (Yet Another Single Cell (scRNA) Pieline: https://github.com/wtsi-hgi/yascp) is a nextflow pipeline that QCs the scRNA Cellranger data by removing ambient RNA, deconvoluting donors, assigning celltypes, analysing concordances vs expected genotypes. IMPROVEMENTS: 1) Hastag deconvolution, 2) Improved results folder structure, 3) Seurat final file production."
puts stderr ""
puts stderr "Yascp module has been set to run in multiple modes:"
puts stderr " *yascp -v or yascp -h :will describe the checkout tag used."
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