Automated g4 rollback of changelist 568259073

PiperOrigin-RevId: 570185628

Dockerfile

@@ -75,9 +75,9 @@ COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/runtime_by
 COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/multisample_make_examples.zip  .
 COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/labeler/labeled_examples_to_vcf.zip  .
 COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/make_examples_somatic.zip  .
-COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/scripts/run_deepvariant.zip  .
-COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/scripts/run_deepsomatic.zip  .
 COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/train.zip  .
+COPY --from=builder /opt/deepvariant/scripts/run_deepvariant.py .
+COPY --from=builder /opt/deepvariant/scripts/run_deepsomatic.py .
 
 RUN ./run-prereq.sh
 
@@ -129,11 +129,11 @@ RUN \
     /opt/deepvariant/bin/make_examples_somatic && \
   printf "%s\n%s\n" \
     "${BASH_HEADER}" \
-    'python3 -u /opt/deepvariant/bin/run_deepvariant.zip "$@"' > \
+    'python3 -u /opt/deepvariant/bin/run_deepvariant.py "$@"' > \
     /opt/deepvariant/bin/run_deepvariant && \
   printf "%s\n%s\n" \
     "${BASH_HEADER}" \
-    'python3 -u /opt/deepvariant/bin/run_deepsomatic.zip "$@"' > \
+    'python3 -u /opt/deepvariant/bin/run_deepsomatic.py "$@"' > \
     /opt/deepvariant/bin/run_deepsomatic && \
   printf "%s\n%s\n" \
     "${BASH_HEADER}" \

Dockerfile.deeptrio

@@ -62,7 +62,7 @@ COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/postproces
 COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/vcf_stats_report.zip  .
 COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/show_examples.zip  .
 COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/runtime_by_region_vis.zip  .
-COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/scripts/run_deeptrio.zip  ./deeptrio/
+COPY --from=builder /opt/deepvariant/scripts/run_deeptrio.py ./deeptrio/
 COPY --from=builder /opt/deepvariant/bazel-out/k8-opt/bin/deeptrio/make_examples.zip  ./deeptrio/
 RUN ./run-prereq.sh
 
@@ -102,7 +102,7 @@ RUN \
     /opt/deepvariant/bin/runtime_by_region_vis && \
   printf "%s\n%s\n" \
     "${BASH_HEADER}" \
-    'python3 /opt/deepvariant/bin/deeptrio/run_deeptrio.zip "$@"' > \
+    'python3 -u /opt/deepvariant/bin/deeptrio/run_deeptrio.py "$@"' > \
     /opt/deepvariant/bin/deeptrio/run_deeptrio && \
   chmod +x /opt/deepvariant/bin/deeptrio/make_examples \
     /opt/deepvariant/bin/call_variants \

build_release_binaries.sh

@@ -127,15 +127,6 @@ bazel build -c opt \
   --build_python_zip \
   :binaries-deeptrio
 
-# shellcheck disable=SC2086
-bazel build -c opt \
-  --output_filter=DONT_MATCH_ANYTHING \
-  --noshow_loading_progress \
-  --show_result=0 \
-  ${DV_COPT_FLAGS} \
-  --build_python_zip \
-  //deepvariant/scripts:binaries
-
 # shellcheck disable=SC2086
 bazel build  -c opt \
   --output_filter=DONT_MATCH_ANYTHING \
@@ -161,6 +152,3 @@ fix_zip_file "bazel-out/k8-opt/bin/deepvariant/show_examples"
 fix_zip_file "bazel-out/k8-opt/bin/deepvariant/runtime_by_region_vis"
 fix_zip_file "bazel-out/k8-opt/bin/deepvariant/multisample_make_examples"
 fix_zip_file "bazel-out/k8-opt/bin/deepvariant/labeler/labeled_examples_to_vcf"
-fix_zip_file "bazel-out/k8-opt/bin/deepvariant/scripts/run_deepvariant"
-fix_zip_file "bazel-out/k8-opt/bin/deepvariant/scripts/run_deeptrio"
-fix_zip_file "bazel-out/k8-opt/bin/deepvariant/scripts/run_deepsomatic"