Update count_geno.py

zhaoyang-li-bio · Oct 16, 2019 · 4e78dab · 4e78dab
1 parent bc8d19d
commit 4e78dab
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/count_geno.py b/count_geno.py
@@ -7,6 +7,13 @@
 import argparse
 import gzip
 
+#count_work.sh
+#sed -i 's/\t/ /g' $1;
+#cut -f 1,2,3 -d ' ' $1 >head_geno.txt;
+#cut -f 1,2,3 --complement -d ' ' $1 >bady_geno.txt;
+#python count_geno.py -i bady_geno.txt >count.txt;
+#paste head_geno.txt count.txt >result.txt
+
 def count_geno():
 	parser = argparse.ArgumentParser(description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)
 	parser.add_argument("-i", "--input", action="store", dest="filename", required=True,help="Name of genotype(generated by iTools)")
@@ -35,4 +42,3 @@ def count_geno():
 
 if __name__ == "__main__":
     count_geno()
-