fix to mac compilcation memmem

zhou-lab · May 15, 2018 · bcd05f3 · bcd05f3
1 parent f59394b
commit bcd05f3
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/lib/aln/bwamem.c b/lib/aln/bwamem.c
@@ -200,7 +200,7 @@ typedef struct {
  * The return value is a pointer to the beginning of the sub-string, or
  * NULL if the substring is not found.
  */
-static void *memmem(const void *haystack, size_t hlen, const void *needle, size_t nlen) {
+static void *wzmemmem(const void *haystack, size_t hlen, const void *needle, size_t nlen) {
   int needle_first;
   const void *p = haystack;
   size_t plen = hlen;
@@ -223,7 +223,7 @@ static void *memmem(const void *haystack, size_t hlen, const void *needle, size_
 static void read_identify_adaptor(bseq1_t *seq, uint8_t *adaptor, int l_adaptor) {
   if (adaptor == NULL) seq->l_adaptor = 0;
   else {
-    uint8_t *adaptor_firstbase = memmem(seq->seq, seq->l_seq, adaptor, l_adaptor);
+    uint8_t *adaptor_firstbase = wzmemmem(seq->seq, seq->l_seq, adaptor, l_adaptor);
     if (adaptor_firstbase) seq->l_adaptor = seq->l_seq-(adaptor_firstbase-seq->seq);
     else {
       int i;

diff --git a/src/biscuit.h b/src/biscuit.h
@@ -1,4 +1,4 @@
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.3.8.20180506"
+#define PACKAGE_VERSION "0.3.8.20180515"
 
 #endif