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remove linked directories from creation #826

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Dec 4, 2024
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7 changes: 4 additions & 3 deletions scripts/link-data.sh
Original file line number Diff line number Diff line change
@@ -1,4 +1,6 @@
#! /bin/bash
#!/bin/bash

set -euo pipefail

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# This script is used to establish symlinks for training modules to use data
# stored in a shared directory.
@@ -36,13 +38,12 @@ mkdir -p scRNA-seq/data/PBMC-TotalSeqB/normalized/
mkdir -p scRNA-seq-advanced/analysis/mouse-liver
mkdir -p scRNA-seq-advanced/data/PBMC-TotalSeqB/normalized
mkdir -p scRNA-seq-advanced/data/ewing-sarcoma/annotations
mkdir -p scRNA-seq-advanced/data/ewing-sarcoma/processed
mkdir -p scRNA-seq-advanced/data/glioblastoma-10x
mkdir -p scRNA-seq-advanced/data/rms/integrated
mkdir -p scRNA-seq-advanced/data/rms/annotations
mkdir -p scRNA-seq-advanced/data/pancreas
mkdir -p scRNA-seq-advanced/data/hodgkins
mkdir -p scRNA-seq-advanced/data/wilms-tumor/processed
mkdir -p scRNA-seq-advanced/data/wilms-tumor

# Machine learning module directory
mkdir -p machine-learning/data