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@BGI-Qingdao

BGI-QingDao

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  1. TGS-GapCloser TGS-GapCloser Public

    A gap-closing software tool that uses long reads to enhance genome assembly.

    C++ 189 14

  2. HAST HAST Public

    HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy

    C++ 18 1

  3. stlfr2supernova_pipeline stlfr2supernova_pipeline Public

    A pipeline to de novo assemble the stLFR reads using Supernova Assembler

    Shell 20 5

  4. SLR-superscaffolder SLR-superscaffolder Public

    A scaffold assembling pipeline for stLFR reads.

    C++ 15 1

  5. MetaTrass MetaTrass Public

    Metagenomics Taxonomic Reads Assembly Single-Species

    Rebol 16 4

  6. VT3D VT3D Public

    VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas

    JavaScript 13

Repositories

Showing 10 of 49 repositories
  • SpaGRN Public

    A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.

    BGI-Qingdao/SpaGRN’s past year of commit activity
    Python 6 GPL-3.0 2 0 0 Updated Jan 9, 2025
  • 4D-BioReconX Public

    a bioinformatic framework for reconstructing 4D spatial transcriptomics atlas and spatiotemporal analyses+

    BGI-Qingdao/4D-BioReconX’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Dec 22, 2024
  • ZebrafishHeartRegeneration_project Public

    All scripts for project: zebrafish heart regeneneration

    BGI-Qingdao/ZebrafishHeartRegeneration_project’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Dec 9, 2024
  • SpaGRN_HomePage Public Forked from cchd0001/VT3D_Index

    The homepage of SpaGRN project

    BGI-Qingdao/SpaGRN_HomePage’s past year of commit activity
    Vue 0 2 0 0 Updated Dec 9, 2024
  • Burnett Public

    evolution

    BGI-Qingdao/Burnett’s past year of commit activity
    Python 0 0 0 0 Updated Dec 6, 2024
  • scMultimodal Public

    Multimodal integration of various types of sequencing data

    BGI-Qingdao/scMultimodal’s past year of commit activity
    Python 1 0 0 0 Updated Nov 28, 2024
  • strobeQV Public

    This script calculates the quality value (QV) based on strobemers.

    BGI-Qingdao/strobeQV’s past year of commit activity
    C++ 2 GPL-3.0 0 0 0 Updated Nov 8, 2024
  • VT3D Public

    VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas

    BGI-Qingdao/VT3D’s past year of commit activity
    JavaScript 13 GPL-3.0 0 0 0 Updated Nov 6, 2024
  • SpaSimulator Public

    SRT data simulator

    BGI-Qingdao/SpaSimulator’s past year of commit activity
    Python 1 0 0 0 Updated Sep 11, 2024
  • GOMC Public
    BGI-Qingdao/GOMC’s past year of commit activity
    R 13 1 1 0 Updated Sep 10, 2024

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