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21 Open 89 Closed
21 Open 89 Closed
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Issues list

Speed up LD calculation
#217 opened Nov 27, 2024 by Lipastomies
@Lipastomies
3
Fix documentation documentation
#216 opened Nov 26, 2024 by Lipastomies
@Lipastomies
1
Using online LD api in workflows will break post processing step bug Something isn't working
#204 opened Jun 5, 2023 by Lipastomies
@Lipastomies
in some rare occasions lead_enrichment is NA even gnomad annotation exists
#188 opened Jun 29, 2021 by Fedja
@Lipastomies
1
Start using gcsfuse in wdl
#168 opened Mar 22, 2021 by Lipastomies
@Lipastomies
minimize docker image size
#167 opened Mar 10, 2021 by Lipastomies
@Lipastomies
Explore if open targets genetics could be used
#136 opened Jun 8, 2020 by Fedja
@Lipastomies
1
Remove naming inconsistencies between the main script and wdl parameters enhancement New feature or request
#123 opened May 19, 2020 by Lipastomies
@Lipastomies
WDL documentation documentation
#122 opened May 18, 2020 by sinarueeger
2
Add pairwise LD api for linkage enhancement New feature or request
#117 opened May 13, 2020 by Lipastomies
@Lipastomies
2
improve documentation documentation
#113 opened May 1, 2020 by Fedja
@Lipastomies
Variants are duplicated in report.out bug Something isn't working
#106 opened Apr 21, 2020 by Lipastomies
@Lipastomies
Credible sets might contain other credible set variants if they are in sufficient ld bug Something isn't working
#104 opened Apr 20, 2020 by Lipastomies
@Lipastomies
6
Remove p-value thresholds from credible set grouping enhancement New feature or request Internals Relevant to the inner unction of the tool
#102 opened Apr 17, 2020 by Lipastomies
@Lipastomies
1
Add UKBB/Exome scans as a datasource enhancement New feature or request
#95 opened Mar 27, 2020 by Lipastomies
2 tasks
@Lipastomies
Add gathering step to widdle enhancement New feature or request
#89 opened Mar 11, 2020 by Lipastomies
@Lipastomies
error if special characters in column names. replace illegal characters or warning or error out early enhancement New feature or request
#68 opened Jan 30, 2020 by Fedja
1
@Lipastomies
1
Would a configuration file be useful? question Further information is requested
#59 opened Jan 21, 2020 by Lipastomies
@Lipastomies
Change variant identifier to be consistent with other data in FinnGen project enhancement New feature or request
#54 opened Jan 8, 2020 by Lipastomies
@Lipastomies
1
Document all functions according to reStructuredText (reST) enhancement New feature or request
#33 opened Nov 13, 2019 by Lipastomies
@Lipastomies
add ld check between clump variants and padded gwas variants in top_report also enhancement New feature or request lowpriority Low priority tasks
#26 opened Aug 23, 2019 by Fedja
@Lipastomies
ProTip! Exclude everything labeled bug with -label:bug.