use BiocGenerics:::replaceSlots() instead of BiocGenerics:::updateS4()

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomicRanges@105626 bc3139a8-67e5-0310-9ffc-ced21a209358
RamsinghLab · Jun 29, 2015 · 91d2c53 · 91d2c53
1 parent 0fbdf47
commit 91d2c53
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -7,12 +7,12 @@ Description: The ability to efficiently represent and manipulate genomic
 	intervals. Specialized containers for representing and manipulating
 	short alignments against a reference genome are defined in the
 	GenomicAlignments package.
-Version: 1.21.15
+Version: 1.21.16
 Author: P. Aboyoun, H. Pages and M. Lawrence
 Maintainer: Bioconductor Package Maintainer <[email protected]>
 biocViews: Genetics, Infrastructure, Sequencing, Annotation, Coverage,
 	GenomeAnnotation
-Depends: R (>= 2.10), methods, BiocGenerics (>= 0.11.3), S4Vectors (>= 0.7.3),
+Depends: R (>= 2.10), methods, BiocGenerics (>= 0.15.3), S4Vectors (>= 0.7.3),
 	IRanges (>= 2.3.11), GenomeInfoDb (>= 1.1.20)
 Imports: utils, stats, XVector
 LinkingTo: S4Vectors, IRanges

diff --git a/R/GenomicRanges-class.R b/R/GenomicRanges-class.R
@@ -475,7 +475,7 @@ setMethod("clone", "ANY",  # not exported
 setMethod("update", "GenomicRanges",
           function(object, ...)
           {
-            BiocGenerics:::updateS4(object, ...)
+            BiocGenerics:::replaceSlots(object, ...)
           })
 
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