add schema and revert functions

broadinstitute · Jan 29, 2025 · e6553ad · e6553ad
1 parent 50b21af
commit e6553ad
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Showing 3 changed files with 136 additions and 387 deletions.
diff --git a/gnomad_qc/v5/configs/__init__.py b/gnomad_qc/v5/configs/__init__.py
diff --git a/gnomad_qc/v5/configs/validity_inputs_schema.py b/gnomad_qc/v5/configs/validity_inputs_schema.py
@@ -0,0 +1,32 @@
+schema = {
+    "type": "object",
+    "properties": {
+        "missingness_threshold": {"type": "number"},
+        "indexed_array_annotations": {
+            "type": "object",
+            "additionalProperties": {"type": "string"}  # Allow any string keys with string values
+        },
+        "struct_annotations_for_missingness": {
+            "type": "array",
+            "items": {"type": "string"}
+        },
+        "freq_meta_expr": {"type": "string"},
+        "freq_annotations_to_sum": {
+            "type": "array",
+            "items": {"type": "string"}
+        },
+        "freq_sort_order": {
+            "type": "array",
+            "items": {"type": "string"}
+        }
+    },
+    "required": [
+        "missingness_threshold",
+        "indexed_array_annotations",
+        "struct_annotations_for_missingness",
+        "freq_meta_expr",
+        "freq_annotations_to_sum",
+        "freq_sort_order"
+    ],
+    "additionalProperties": False
+}