v4 subset update to include variant QC #539
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| @@ -280,11 +341,18 @@ def main(args): | |||
| overwrite=args.overwrite, | |||
| ) | |||
| ht = adjust_vcf_incompatible_types(ht) | |||
| mt = mt.annotate_rows(info=ht[mt.row_key].info) | |||
|
|
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| info_expr = ht[mt.row_key].info | |||
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So I hit this when I made a subset back in October but VRS is a struct within the info and hails export VCF does not like that. Given the timeline and us being in the middle of production, KC and I decided to drop the annotation. I think we could drop or remove the struct when we are delivering a VCF?
mike-w-wilson
approved these changes
Dec 6, 2023
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