Code

Rewrite spherical harmonics as class#374

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jo-mueller merged 62 commits intocampaslab:maincampaslab/napari-stress:mainfrom jo-mueller:rewrite-spherical-harmonics-as-classjo-mueller/napari-stress:rewrite-spherical-harmonics-as-classCopy head branch name to clipboardJul 12, 2024

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Commits

Commits on Jan 17, 2024

• added new classes for spherical harmonics expansion

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• made classes public

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• use new expansion function in napari menu

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• Added tests

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• Updated docs

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Commits on Apr 8, 2024

• introduced residuals as separate measurements function

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• changed interfacial tension default value

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• use dict as type for properties

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• rewrote _measure_properties to work without inputs

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• used ellipsoid expander to calculate min/max curvatures and anisotropies

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Commits on Apr 11, 2024

• Merge remote-tracking branch 'upstream/main' into rewrite-spherical-harmonics-as-class

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• moved expansion application functions to separate file

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• Merge remote-tracking branch 'origin/use-expander-in-curvature-calculation' into rewrite-spherical-harmonics-as-class

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Commits on Apr 12, 2024

• Merge branch 'use-abc-for-expansion' into rewrite-spherical-harmonics-as-class

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• avoided storing data inside EllipsoidExpander

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• put max/min curvature calculation in separate function

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• put max/min curvature calculation in separate function

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• split porperty calculation in subfunctions called by parent class abstract method

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• added docstring

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• moved power spectrum calculation down to private function

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• removed get_measurements option

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• code style

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• stored expansion properties properly (features, metadata) in viewer layer

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• added more docstring

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• split power spectrum calculation in separate function (individual coeffs and aggregator)

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• code style

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• Reran notebook

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• used Expanders in toolbox where applicble

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• used auto-derived anisotropy rather than specific function

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Commits on May 14, 2024

• Merge remote-tracking branch 'upstream/main' into rewrite-spherical-harmonics-as-class

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• wrote more concise formulate for cartesian expansion

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• made cartesian expansion more concise

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• added functionality for radial expansion

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• removed internal data storage

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• added lsq harmonics fit as member function

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• used ficture in tests to use real droplet pointcloud instead of ellipsoid

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• remove redundant test

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• remove deprecated get_measurements

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• changed name of helper function

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• increase degree to ensure passing test

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• added test for radial expansion

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Commits on Jul 10, 2024

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Commits on Jul 11, 2024

• explictly passed gamma value as argument and removed __main__ in test

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• Merge branch 'rewrite-spherical-harmonics-as-class' of https://github.com/jo-mueller/napari-stress into rewrite-spherical-harmonics-as-class

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• added coefficients_ property to expansion class

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• added check whether a None value has been passed (relevant during init)

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• added test

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• added macos to tested OS

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• Revert "added macos to tested OS"

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• fixed bug in coefficients property

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• Merge branch 'rewrite-spherical-harmonics-as-class' of https://github.com/jo-mueller/napari-stress into rewrite-spherical-harmonics-as-class

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• Turned expander.coefficients_ into property and use expander._coefficients internally

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• Merge branch 'rewrite-spherical-harmonics-as-class' of https://github.com/jo-mueller/napari-stress into rewrite-spherical-harmonics-as-class

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• fixed getting properties from properties attribute

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• Merge branch 'rewrite-spherical-harmonics-as-class' of https://github.com/jo-mueller/napari-stress into rewrite-spherical-harmonics-as-class

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• Added docstrings

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• added docstrings

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• turned attribute properties into @property

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