v1.1.0

Added

• Diamond as the third tool for prediction.

• Conclude module to report an overview of the predictions made by each tool.

Changed

• Use a menu to display all the available modules.

Removed

• Output to stdout and input from stdin in not available anymore.

v1.0.2

Changed

• Unify the runner function for cazyme and substrate detections.

Fixed

• Fix bugs for output from dbcanLight-hmmparser and dbcanLight-subparser.

v1.0.1

Fixed

• Fix typo in substrate discovery module which lead to file not found error.

v1.0.0

Added

• Implement cazyme and substrate detection with multi-threads supported hmmsearch from pyhmmer.
• Companion commands dbcanLight-hmmparser (hmmsearch_parser.py) helps to convert conventional hmmer3 output to dbcan format and dbcanLight-subparser (substrate_parser.py) helps to map to the potential substrate (require to search against the substrate hmm porfile).
• Rewrite the hmmsearch filtering codes initally written in Perl by Yanbin Yin@NIU to a Python function overlap_filter under hmmsearch_parser.py.
• Process and filter hmmsearch hits on-the-fly to prevent the out-of-memory issue for large input files.