Multisession modeling functionality for AutoLFADS #176
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| name: pr-test | |
| on: | |
| issue_comment: | |
| types: [created] | |
| jobs: | |
| test-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: vet commenter | |
| id: vet | |
| if: github.event.comment.user.login != 'cellistigs' | |
| run: exit 1 | |
| - name: acknowledge test request to commenter | |
| id: check | |
| uses: khan/pull-request-comment-trigger@master | |
| with: | |
| trigger: "#test:" | |
| prefix_only: true | |
| reaction: rocket | |
| env: | |
| GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}" | |
| - name: check outputs | |
| run: echo ${{ steps.check.outputs.triggered }} | |
| outputs: | |
| triggered: ${{ steps.check.outputs.triggered }} | |
| comment_body: ${{ github.event.comment.body }} | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: test-check | |
| if: needs.test-check.outputs.triggered == 'true' | |
| steps: | |
| - name: get pull request ref | |
| id: get_pull_request_ref | |
| uses: octokit/[email protected] | |
| with: | |
| route: GET /repos/{owner}/{repo}/pulls/{issue_id} | |
| owner: cunningham-lab | |
| repo: neurocaas | |
| repository: ${{ github.repository }} | |
| issue_id: ${{ github.event.issue.number }} | |
| env: | |
| GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}" | |
| - name: create test | |
| id: create_test | |
| uses: octokit/[email protected] | |
| with: | |
| route: POST /repos/{owner}/{repo}/deployments | |
| owner: cunningham-lab | |
| repo: neurocaas | |
| repository: ${{ github.repository }} | |
| ref: ${{ fromJson(steps.get_pull_request_ref.outputs.data).head.ref }} | |
| environment: dev | |
| auto_merge: false | |
| env: | |
| GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}" | |
| - name: set test status to in progress | |
| id: start_test | |
| uses: octokit/[email protected] | |
| with: | |
| route: POST /repos/{owner}/{repo}/deployments/{deployment}/statuses | |
| owner: cunningham-lab | |
| repo: neurocaas | |
| repository: ${{ github.repository }} | |
| deployment: ${{ fromJson(steps.create_test.outputs.data).id }} | |
| environment: dev | |
| environment_url: https://example.com | |
| log_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| state: in_progress | |
| mediaType: '{"previews": ["flash", "ant-man"]}' | |
| env: | |
| GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}" | |
| - name: get stack name | |
| uses: jungwinter/split@v1 | |
| id: split | |
| with: | |
| msg: "#test:test-tags-bucket" #${{ needs.test-check.outputs.comment_body }} | |
| seperator: ':' | |
| - name: Use the master repo to test. | |
| uses: actions/checkout@v2 | |
| with: | |
| persist-credentials: false | |
| ref: ${{ fromJson(steps.get_pull_request_ref.outputs.data).base.sha }} | |
| - name: setup python. | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| # Log in to docker hub. | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| # Configure AWS credentials. | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| aws-access-key-id: ${{ secrets.DEPLOY_AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.DEPLOY_AWS_SECRET_ACCESS_KEY }} | |
| # aws-session-token: ${{ secrets.AWS_SESSION_TOKEN }} # if you have/need it | |
| aws-region: us-east-1 | |
| - name: Install Repo. | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; | |
| bash miniconda.sh -b -p $HOME/miniconda | |
| source "$HOME/miniconda/etc/profile.d/conda.sh" | |
| hash -r | |
| conda config --set always_yes yes --set changeps1 no | |
| conda update -q conda | |
| conda config --append envs_dirs $HOME/miniconda/envs | |
| conda create -n neurocaas | |
| conda activate neurocaas | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install aws-sam-cli==0.53.0 | |
| pip install localstack==0.12.3 | |
| pip install ./ | |
| sudo apt-get install jq | |
| - name: Test stack | |
| run: | | |
| cd ncap_iac/ncap_blueprints | |
| source "$HOME/miniconda/etc/profile.d/conda.sh" | |
| conda activate neurocaas | |
| bash iac_utils/fulltest.sh ${{ steps.split.outputs._1 }} | |
| - name: Set test status to success | |
| id: successful_test | |
| uses: octokit/[email protected] | |
| with: | |
| route: POST /repos/{owner}/{repo}/deployments/{deployment}/statuses | |
| owner: cunningham-lab | |
| repo: neurocaas | |
| repository: ${{ github.repository }} | |
| deployment: ${{ fromJson(steps.create_test.outputs.data).id }} | |
| environment: dev | |
| environment_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| log_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| mediaType: '{"previews": ["ant-man"]}' | |
| state: success | |
| env: | |
| GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}" | |
| - name: set test status to failure | |
| id: failed_test | |
| uses: octokit/[email protected] | |
| if: failure() | |
| with: | |
| route: POST /repos/{owner}/{repo}/deployments/{deployment}/statuses | |
| owner: cunningham-lab | |
| repo: neurocaas | |
| repository: ${{ github.repository }} | |
| deployment: ${{ fromJson(steps.create_test.outputs.data).id }} | |
| environment: dev | |
| environment_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| log_url: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| mediaType: '{"previews": ["ant-man"]}' | |
| state: failure | |
| env: | |
| GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}" |