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Giotto v4.1.5 #1066

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merged 33 commits into from
Nov 8, 2024
Merged

Giotto v4.1.5 #1066

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f41142b
temp
jiajic Oct 16, 2024
3436f49
chore: bump version for dev and drop remotes
jiajic Oct 30, 2024
7291349
Merge pull request #1062 from jiajic/suite_dev
jiajic Oct 30, 2024
1821c80
Merge branch 'suite' into suite_dev
jiajic Nov 1, 2024
578f39e
Update convenience_xenium.R
jiajic Nov 6, 2024
ae212be
Revert "temp"
jiajic Nov 6, 2024
16a30bf
Merge branch 'suite_dev' into xen_update
jiajic Nov 6, 2024
f61dcfd
Update convenience_xenium.R
jiajic Nov 6, 2024
8b0950f
temporarily lower R ver
jiajic Nov 6, 2024
ad9314f
Update convenience_xenium.R
jiajic Nov 6, 2024
f981835
Update convenience_xenium.R
jiajic Nov 6, 2024
eff1c71
Update convenience_xenium.R
jiajic Nov 6, 2024
8bf5431
Update convenience_xenium.R
jiajic Nov 6, 2024
0157ba8
fix tif path checking
jiajic Nov 7, 2024
2eb20b5
Update convenience_xenium.R
jiajic Nov 7, 2024
57788f0
fix: allow overwrite passing though ...
jiajic Nov 7, 2024
8555ccf
fix: change when image input type is checked
jiajic Nov 7, 2024
52abd97
fix: missing comma
jiajic Nov 7, 2024
5359eb2
fix: warning that the "focus" dir does not exist
jiajic Nov 7, 2024
4d35750
fix: focus img dir assignment
jiajic Nov 7, 2024
a23ca0e
Update convenience_xenium.R
jiajic Nov 7, 2024
0559c44
fix: ignore subdirectories within image focus dir
jiajic Nov 7, 2024
4a9da54
add centroid creation step
jiajic Nov 7, 2024
84c9cd2
Update convenience_xenium.R
jiajic Nov 7, 2024
1e33aa1
enh: update conv. fun
jiajic Nov 7, 2024
4e4e2dd
revert default changes
jiajic Nov 7, 2024
7f70a92
update prints and run docs
jiajic Nov 7, 2024
34d10ad
Revert "temporarily lower R ver"
jiajic Nov 7, 2024
ae5eab2
Merge pull request #1064 from jiajic/xen_update
jiajic Nov 7, 2024
fbdb139
chore: update news
jiajic Nov 7, 2024
4613aa8
chore: update news
jiajic Nov 8, 2024
89a031a
chore: add back remotes
jiajic Nov 8, 2024
084d645
Merge pull request #1065 from jiajic/suite_dev
jiajic Nov 8, 2024
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: Giotto
Title: Spatial Single-Cell Transcriptomics Toolbox
Version: 4.1.4
Version: 4.1.5
Authors@R: c(
person("Ruben", "Dries", email = "[email protected]",
role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7650-7754")),
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6 changes: 6 additions & 0 deletions NEWS.md
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@@ -1,4 +1,10 @@

# Giotto 4.1.5 (2024/11/08)

## Enhancements
* `createGiottoXeniumObject()` auto loading for morphology focus images, image directory loading, auto centroid calculation, allow skipping transcript loading


# Giotto 4.1.4 (2024/10/30)

## Changes
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