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update manhattan plot to align with rest of results #379

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update manhattan plot to align with rest of results

update manhattan plot to align with rest of results #379

Triggered via push January 14, 2025 14:46
@ejh243ejh243
pushed 527107e
scz-ewas-analyses
Status Success
Total duration 1m 43s
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super-lint.yml

on: push
Lint code base
1m 34s
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11 warnings
Lint code base
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L34
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=34,col=18,[seq_linter] 1:nrow(...) is likely to be wrong in the empty edge case. Use seq_len(nrow(...)) instead.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L54
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=54,col=32,[extraction_operator_linter] Use `[[` instead of `[` to extract an element.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L64
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=64,col=16,[extraction_operator_linter] Use `[[` instead of `[` to extract an element.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L65
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=65,col=16,[extraction_operator_linter] Use `[[` instead of `[` to extract an element.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L67
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=67,col=33,[nonportable_path_linter] Use file.path() to construct portable file paths.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L68
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=68,col=32,[nonportable_path_linter] Use file.path() to construct portable file paths.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L103
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=103,col=39,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L103
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=103,col=74,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L104
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=104,col=42,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
Lint code base: array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r#L105
file=/github/workspace/array/DNAm/analysis/EWAS/summariseWithinCTDMPs.r,line=105,col=42,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.