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27 Open 125 Closed
27 Open 125 Closed
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Issues list

[Bug]: Library loading is not 100% quiet bug Something isn't working DNAm DNA methylation array good first issue Good for newcomers
#294 opened Feb 6, 2025 by sof202
1
[Code Refactor]: Config file being referenced is not consistent across rmarkdown files in DNAm QC pipeline enhancement New feature or request
#292 opened Feb 3, 2025 by sof202
1
@sof202
[Bug]: Failing to run ctCheck.rmd in DNA methylation QC pipeline bug Something isn't working
#290 opened Feb 3, 2025 by m-kouhsar
2
[Bug]: Generating plots failing in DNA methylation QC bug Something isn't working
#288 opened Feb 3, 2025 by m-kouhsar
1
@sof202
[Bug]: List of R libraries to install is outdated ATACSeq ATAC-seq data bug Something isn't working
#277 opened Dec 12, 2024 by marinafloresp
@marinafloresp
[Bug]: Incorrect labelling of the "Ratio of M and U Intensities" box plots bug Something isn't working
#265 opened Nov 28, 2024 by lw371
2
[Documentation Fault]: Create contracts for each stage/section of DNAm QC pipeline DNAm DNA methylation array documentation Faults in the documentation
#259 opened Nov 19, 2024 by sof202
2
[Documentation Fault]: Create a UML diagram explaining the steps for the DNAm QC pipeline DNAm DNA methylation array documentation Faults in the documentation
#258 opened Nov 19, 2024 by sof202
[Code Refactor]: Orthogonalise the DNAm QC pipeline DNAm DNA methylation array enhancement New feature or request important This is important refactor Code refactor
#257 opened Nov 19, 2024 by sof202
1
[Documentation Fault]: Add example sampleSheet files DNAm DNA methylation array documentation Faults in the documentation good first issue Good for newcomers
#256 opened Nov 15, 2024 by sof202
@lw371
1
[Documentation Fault]: Poor clarity in DNAm config files DNAm DNA methylation array documentation Faults in the documentation
#255 opened Nov 15, 2024 by sof202
[Documentation Fault]: Repeated and incomplete information in README documentation Faults in the documentation
#252 opened Nov 13, 2024 by sof202
[Code Refactor]: Multiple variables currently exist for same data (Sentrix_ID and _Position) enhancement New feature or request
#224 opened Sep 23, 2024 by ew367
@ew367
[Bug]: installLibraries.r script contains errors and is missing libraries essential to run QC.rmd bug Something isn't working
#221 opened Sep 23, 2024 by ew367
@ew367
[Enhancement suggestion]: qual summary stats DNAm DNA methylation array enhancement New feature or request
#212 opened Sep 20, 2024 by ejh243
1
[Bug]: r config file incorrectly specificed in config template bug Something isn't working DNAm DNA methylation array
#176 opened Aug 23, 2024 by ejh243
1
[Bug]: V2 Probe names need to be cleaned before EWAS bug Something isn't working DNAm DNA methylation array
#165 opened Jul 26, 2024 by rhaigh5
@rhaigh5
[Code Refactor]: Possible temporary file ATACSeq ATAC-seq data
#155 opened Jul 3, 2024 by sof202
@ew367
[Enhancement suggestion]: Add parameters config file All All data modalities enhancement New feature or request TeamMeeting Add to issues that need highlighting/discussing in Team meetings
#154 opened Jun 25, 2024 by marinafloresp
@marinafloresp
[Bug]: DNAm QC pipeline sex check thresholds bug Something isn't working DNAm DNA methylation array
#152 opened Jun 11, 2024 by ejh243
1
@ejh243 @bethan-mallabar-rimmer
5
[Code Refactor]: Add cetygo into cell type check QC report DNAm DNA methylation array enhancement New feature or request
#127 opened Apr 30, 2024 by ejh243
@ew367
1
[Enhancement suggestion]: Generalise overlapping cell type classification enhancement New feature or request
#124 opened Apr 30, 2024 by ejh243
[Enhancement suggestion]: add check that sampleSheet Sentrix_ID col is not in scientific notation enhancement New feature or request
#84 opened Mar 27, 2024 by ew367
3
[Enhancement suggestion]: add option to DNAm QC pipeline to run CETYGO deconvolution on normalised data enhancement New feature or request
#83 opened Mar 27, 2024 by ew367
[Enhancement suggestion]: add new post normalisation script that recalculates predicted values enhancement New feature or request
#51 opened Feb 26, 2024 by ew367
1
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