refactor: make argument assignment consistent with other scritps #387
sof202Annotations
10 warnings
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L27
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=27,col=11,[paste_linter] Construct file paths with file.path(...) instead of paste0(x, "/", y, "/", z). Note that paste() converts empty inputs to "", whereas file.path() leaves it empty.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L27
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=27,col=28,[absolute_path_linter] Do not use absolute paths.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L27
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=27,col=28,[nonportable_path_linter] Use file.path() to construct portable file paths.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L53
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=53,col=24,[nonportable_path_linter] Use file.path() to construct portable file paths.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L56
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=56,col=13,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L56
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=56,col=41,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L56
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=56,col=62,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L58
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=58,col=12,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L58
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=58,col=47,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
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Lint code base:
array/DNAm/preprocessing/CETYGOdeconvolution.r#L63
file=/github/workspace/array/DNAm/preprocessing/CETYGOdeconvolution.r,line=63,col=60,[extraction_operator_linter] Use `[[` instead of `$` to extract an element.
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