Various changes for metadata & ERP CORE processing (#260) #595
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| name: Run the test suite | |
| on: [push, pull_request] | |
| jobs: | |
| # run-tests: | |
| # name: ${{ matrix.os }}, Python ${{ matrix.python-version }} | |
| # runs-on: ${{ matrix.os }} | |
| # strategy: | |
| # fail-fast: false | |
| # matrix: | |
| # # os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| # os: ["ubuntu-latest"] | |
| # python-version: ["3.6", "3.7", "3.8"] | |
| # defaults: | |
| # run: | |
| # shell: bash -l {0} | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - uses: conda-incubator/setup-miniconda@v2 | |
| # with: | |
| # auto-update-conda: true | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Conda info | |
| # run: conda info | |
| # - name: Conda list | |
| # run: conda list | |
| # - name: Install datalad | |
| # run: | | |
| # conda install -y -c conda-forge git-annex datalad | |
| # git config --global user.email "[email protected]" | |
| # git config --global user.name "mne user" | |
| # - name: Install Python dependencies | |
| # run: | | |
| # conda install -y -c conda-forge \ | |
| # python=${{ matrix.python-version }} \ | |
| # numpy scipy scikit-learn pandas json_tricks matplotlib \ | |
| # seaborn nibabel coloredlogs python-picard fire \ | |
| # typing_extensions # for Python <3.8 | |
| # # Install MNE | |
| # pip install -U https://api.github.com/repos/mne-tools/mne-python/zipball/master | |
| # # Install MNE-BIDS | |
| # pip install -U https://api.github.com/repos/mne-tools/mne-bids/zipball/master | |
| # - name: Check installation | |
| # run: | | |
| # which python | |
| # git-annex version | |
| # datalad --version | |
| # mne_bids --version | |
| # mne --version | |
| # python -c "import mne; mne.sys_info()" | |
| # - name: Setup reports artifact storage | |
| # run: mkdir ~/reports | |
| # - name: test ds000246 | |
| # run: | | |
| # export DS=ds000246 | |
| # python ./tests/run_tests.py ${DS} | |
| # mkdir ~/reports/${DS} | |
| # cp ~/mne_data/${DS}/derivatives/mne-study-template/*/**/*.html ~/reports/${DS}/ | |
| # cp ~/mne_data/${DS}/derivatives/mne-study-template/*/**/*.tsv ~/reports/${DS}/ | |
| # rm -rf ~/mne_data/${DS}/derivatives/mne-study-template/ | |
| # - name: Store artifacts | |
| # uses: actions/upload-artifact@v2 | |
| # with: | |
| # name: reports | |
| # path: ~/reports | |
| check-style: | |
| name: Check style | |
| runs-on: "ubuntu-latest" | |
| strategy: | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| - name: Conda info | |
| run: conda info | |
| - name: Conda list | |
| run: conda list | |
| - name: Install flake8 | |
| run: conda install -y flake8 | |
| - name: Lint scripts with flake8 | |
| run: flake8 ./run*.py ./scripts --exclude ./scripts/freesurfer/contrib | |
| - name: Lint config.py with flake8 | |
| run: flake8 ./config.py --ignore=E501,W503,W504 |