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Update current clade references #1142

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merged 2 commits into from
Aug 15, 2024
Merged

Update current clade references #1142

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1506bf1
Remove stale clade table
victorlin Aug 15, 2024
1db33ec
Update current clades link to reference datasets
victorlin Aug 15, 2024
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16 changes: 1 addition & 15 deletions docs/src/reference/naming_clades.rst
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Expand Up @@ -34,21 +34,7 @@ Within these major clades, we subclades, which we will label by their parent cla
Current Clades
--------------

+-----------------+--------------------------------------------+-------------------------+-------------------------+
| Clade | Primary Countries | Mutations | Max Frequency |
+=================+============================================+=========================+=========================+
| 19A | Asia: China/Thailand | Root clade | 65-47% Globally in Jan |
+-----------------+--------------------------------------------+-------------------------+-------------------------+
| 19B | Asia: China | C8782T T28144C | 28-33% Globally in Jan |
+-----------------+--------------------------------------------+-------------------------+-------------------------+
| 20A | N America/Europe/Asia: USA, Belgium, India | C14408T A23403G | 41-46% Globally Apr-May |
+-----------------+--------------------------------------------+-------------------------+-------------------------+
| 20B | Europe: UK, Belgium, Sweden | G28881A G28882A G28883C | 19-20% Globally Mar-Apr |
+-----------------+--------------------------------------------+-------------------------+-------------------------+
| 20C | N America: USA | C1059T G25563T | 19-21% Globally Apr |
+-----------------+--------------------------------------------+-------------------------+-------------------------+

You can view the current clades on the Global SARS-CoV-2 Nextstrain tree `here <https://nextstrain.org/ncov/global?branchLabel=clade&c=clade_membership>`__.
You can view the current clades on the `GISAID reference dataset <https://nextstrain.org/ncov/gisaid/reference?branchLabel=clade&c=clade_membership>`__ or `open reference dataset <https://nextstrain.org/ncov/open/reference?branchLabel=clade&c=clade_membership>`__.

Identifying Nextstrain Clades
-----------------------------
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