Fix syntax error

nf-core · Dec 12, 2024 · 4f3bc1e · 4f3bc1e
1 parent 3a90e82
commit 4f3bc1e
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflows/rnaseq/nextflow.config b/workflows/rnaseq/nextflow.config
@@ -134,15 +134,15 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                 ]
             }
 
-            withName: '.*:BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS_TRANSCRIPTOME:UMITOOLS_DEDUP)' {
+            withName: '.*:BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS_TRANSCRIPTOME:UMITOOLS_DEDUP' {
                 ext.args = { [
                     meta.single_end                 ? '' : '--unpaired-reads=discard --chimeric-pairs=discard',
                     params.umitools_grouping_method ? "--method='${params.umitools_grouping_method}'" : '',
                     params.umitools_umi_separator   ? "--umi-separator='${params.umitools_umi_separator}'" : ''
                 ].join(' ').trim() }
             }
 
-            withName: '.*:BAM_DEDUP_STATS_SAMTOOLS_UMICOLLAPSE_TRANSCRIPTOME:UMICOLLAPSE)' {
+            withName: '.*:BAM_DEDUP_STATS_SAMTOOLS_UMICOLLAPSE_TRANSCRIPTOME:UMICOLLAPSE' {
 
                 ext.args = { [
                     '--two-pass',