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108 Open 610 Closed
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Issues list

Large space between plot and axis in violin plot
#2839 opened Feb 18, 2025 by gavrielm
@airenzp
Empty term label on barchart overlay
#2836 opened Feb 18, 2025 by gavrielm
@congyu-lu
corrV: find out what's minimum array length to compute R and skip the small arrays
#2834 opened Feb 18, 2025 by xzhou82
@creilly8
numeric binary tw adjusting cutoff breaks
#2828 opened Feb 18, 2025 by xzhou82
1
@gavrielm
add icon/option to reverse grouping in groups tab to change volcano in DE enhancement New feature or request
#2823 opened Feb 17, 2025 by karishma-gangwani
@creilly8 @robinpaul85
dynamic scatter: stratified lowess curves by a termsetting student project
#2817 opened Feb 16, 2025 by xzhou82
DE volcano: significant up/down gene colors may use colors already supplied in each group of samplelst term
#2816 opened Feb 16, 2025 by xzhou82
@creilly8
DE: disable wilcox option and always run edgeR, take confounding factor selector out of config menu and allow to select multiple variables
#2815 opened Feb 15, 2025 by xzhou82
@creilly8
DE: offer options to rank top genes by either variance or abs(foldchange)?
#2814 opened Feb 15, 2025 by xzhou82
@robinpaul85
DE ui bug: fix improperly designed gsea option
#2813 opened Feb 15, 2025 by xzhou82
@creilly8
summarize gene exp data for a custom term breaks
#2810 opened Feb 15, 2025 by xzhou82
@congyu-lu
DE bug? at edgeR, set 6000 to Variable Gene Cutoff and rerun, then it's showing 4000
#2809 opened Feb 14, 2025 by xzhou82
@creilly8
DE: click a gene to launch gene (exp?) boxplot across two sample groups
#2799 opened Feb 12, 2025 by xzhou82
mds3tk bug: on zooming out, the mclass filter is forgotten
#2788 opened Feb 11, 2025 by xzhou82
@xzhou82
support sorting by 'Median' on violin plot similar to box plot
#2786 opened Feb 11, 2025 by karishma-gangwani
@creilly8
barchart legend color bug: numeric term2 category can revert color
#2782 opened Feb 11, 2025 by karishma-gangwani
@congyu-lu
gsea bug: GSEA plot no show after switching between msigdb and built-in library
#2778 opened Feb 11, 2025 by xzhou82
@robinpaul85 @karishma-gangwani
1
scrna: faded dot color in plot compared to legend category color
#2777 opened Feb 11, 2025 by xzhou82
@airenzp
scrna: highlight a cluster of cells
#2768 opened Feb 8, 2025 by xzhou82
@airenzp
mds3 tk protein view item table: add in additional mutation info
#2767 opened Feb 7, 2025 by xzhou82
DE: integrate genesetEdit ui to input a set of genes and highlight on volcano
#2764 opened Feb 7, 2025 by xzhou82
@creilly8
Numeric term range selection should have start/stop inputs
#2755 opened Feb 6, 2025 by siosonel
@xzhou82
improve mass nav tab styling
#2746 opened Feb 6, 2025 by xzhou82
@creilly8
provide UI option to select geneset from msigdb or blitz-gsea libraries bug Something isn't working enhancement New feature or request
#2737 opened Feb 5, 2025 by karishma-gangwani
@xzhou82 @robinpaul85
mds3 tk breaks on adding gene variant filter
#2730 opened Feb 4, 2025 by xzhou82
@xzhou82
ProTip! Exclude everything labeled bug with -label:bug.