3.5.1

Features:

• fair_genome_indexer up to 3.8.0
• fair_fastqc_multiqc up to 2.3.5

3.5.0

Features:

• fair_genome_indexer up to 3.7.0
• fair_fastqc_multiqc up to 2.3.4

3.4.0

Features:

• Fix benchmark IO for rseqc bamstat
• Use of wrappers for ngsderive
• tmp/logs/benchmark hold rulenames
• fair_fastqc_multiqc and fair_genome_indexer updates
• Pipeline can now localy import sub-modules

3.3.3

Features:

• fair_fastqc_multiqc update to 2.2.7

3.3.2

Features:

• Use human readable functions to replace raw lookups
• Documentation update

3.3.1

Features:

• fair_genome_indexer update to 3.4.0
• fair_fastqc_multiqc update to 2.2.3
• snakemake-wrappers update to 3.7.0

3.3.0

Featues:

• All keys in configuration are now optional
• Snakemake wrappers up to version 3.5.0

3.2.0

Features:

• Snakemake-wrappers update to 3.5.0
• MultiQC configurations
• RSeQC: bamstat, read_distribution, read_gc, infer_experiment, and read_duplication
• Goleft: indexcov
• ngsderive: strandedness, instrument, readlen, and encoding

3.1.1

Fix:

• MultiQC mapping report now holds only the samples belonging to a common {species}.{build}.{release}
• Readme points to the right snakemake version

3.1.0

Features:

• Usage updated
• DAG as ascii art
• tempfiles, logs and benchmarks paths reorganized:
  • tmp/fair_fastqc_multiqc/{rule_name}/{wildcards}.{extension}
  • log/fair_fastqc_multiqc/{rule_name}/{wildcards}.log
  • benchmark/fair_fastqc_multiqc/{rule_name}/{wildcards}.tsv
• use of lookup and collect rather than hand made functions
• All keys in configuration must be present in configuration file