Introduction

PACOM, the Proteomics Assay COMparator is a Java stand-alone tool, open source, for the integration and comparison of multiple proteomics datasets. PACOM provides an innovative, easy-to-use and powerful way of data comparison, generating a lot of different charts with protein and peptide features.

Its flexibility for aggregating and comparing datasets in different levels makes it a unique tool that can be use for quality control (QC) your datasets, and as an ideal tool to test new experimental and data analysis approaches.