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modify discover analyses to also return p values alongside q values CI #221: Commit 3169628 pushed by ashuaibi7
January 14, 2025 22:21 12s main
main
January 14, 2025 22:21 12s
modify fishers exact analysis to return p values alongside q values CI #220: Commit f7ad6d6 pushed by ashuaibi7
January 14, 2025 22:19 13s main
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January 14, 2025 22:19 13s
fix line length extending beyond max advised CI #219: Commit 979dd08 pushed by ashuaibi7
January 14, 2025 22:16 15s main
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January 14, 2025 22:16 15s
change output file name and add imports necessary for network plots tk CI #218: Commit 4981f13 pushed by ashuaibi7
January 14, 2025 21:23 12s main
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January 14, 2025 21:23 12s
added call to plotting function to visualize decoy gene fractions acr… CI #217: Commit f816787 pushed by ashuaibi7
January 13, 2025 18:23 11s main
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January 13, 2025 18:23 11s
modify method name to be more concise and remove reference to plotnine CI #216: Commit 30457e9 pushed by ashuaibi7
January 13, 2025 18:21 15s main
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January 13, 2025 18:21 15s
removed extra space CI #215: Commit 5cfc77e pushed by ashuaibi7
January 13, 2025 18:18 2m 16s main
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January 13, 2025 18:18 2m 16s
wrote script to create plot for decoy gene fractions across methods CI #214: Commit da2f684 pushed by ashuaibi7
January 13, 2025 18:18 11s main
main
January 13, 2025 18:18 11s
modified decoy gene fraction analysis script to make more user friendly CI #213: Commit 8a35d41 pushed by ashuaibi7
January 13, 2025 18:15 16s main
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January 13, 2025 18:15 16s
created and tested script to compute fraction of gene pairs with at l… CI #212: Commit 5e6c2c5 pushed by ashuaibi7
January 13, 2025 18:01 12s main
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January 13, 2025 18:01 12s
created readme file to describe the process of generating the decoy g… CI #211: Commit 678b77f pushed by ashuaibi7
January 13, 2025 13:43 14s main
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January 13, 2025 13:43 14s
generated decoy gene lists for top 100 mutated genes across all TCGA … CI #210: Commit 3678486 pushed by ashuaibi7
January 13, 2025 13:42 11s main
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January 13, 2025 13:42 11s
created script to identify decoy genes (previously referred to as sus… CI #209: Commit 0f0a635 pushed by ashuaibi7
January 13, 2025 13:42 14s main
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January 13, 2025 13:42 14s
downloaded oncokb driver gene list and placed in data/references fold… CI #208: Commit fa70761 pushed by ashuaibi7
January 13, 2025 12:34 15s main
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January 13, 2025 12:34 15s
added todo statement to specify next step in creation of simulation p… CI #207: Commit a16cf9b pushed by ashuaibi7
January 12, 2025 18:04 13s main
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January 12, 2025 18:04 13s
modified function statement for simulate evaluate method and usage in… CI #206: Commit 2c52ed4 pushed by ashuaibi7
January 12, 2025 18:03 12s main
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January 12, 2025 18:03 12s
create parser for single gene simulation evaluation CI #205: Commit e0273a5 pushed by ashuaibi7
January 12, 2025 18:01 14s main
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January 12, 2025 18:01 14s
call method to evaluate single gene from main function CI #204: Commit 5443142 pushed by ashuaibi7
January 12, 2025 17:53 9s main
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January 12, 2025 17:53 9s
export evaluate single gene method from module for easy use in main CI #203: Commit b5a5a1f pushed by ashuaibi7
January 12, 2025 17:52 10s main
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January 12, 2025 17:52 10s
add template method to evaluate single gene simulations CI #202: Commit 0beed06 pushed by ashuaibi7
January 12, 2025 17:50 8s main
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January 12, 2025 17:50 8s
added todo statement to modify Gene class instance variable name to m… CI #201: Commit 7568272 pushed by ashuaibi7
January 12, 2025 17:48 13s main
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January 12, 2025 17:48 13s
reorder arguments added to simulate parser to match order of argument… CI #200: Commit e8d19aa pushed by ashuaibi7
January 12, 2025 17:46 10s main
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January 12, 2025 17:46 10s
import method to create single gene simulation and call method in mai… CI #199: Commit 0858b4d pushed by ashuaibi7
January 12, 2025 17:45 11s main
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January 12, 2025 17:45 11s
export method to create single gene simulation for easy usage from main CI #198: Commit 78d5edc pushed by ashuaibi7
January 12, 2025 17:45 12s main
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January 12, 2025 17:45 12s
added log statements to specify to user exact simulation parameters a… CI #197: Commit 818b18b pushed by ashuaibi7
January 12, 2025 17:44 10s main
main
January 12, 2025 17:44 10s